Variant report

Variant	rs10755700
Chromosome Location	chr6:38089092-38089093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38081404..38083736-chr6:38087188..38089402,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1885325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1923279	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506034	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4714123	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4714125	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6458040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6458042	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6916091	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924634	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6929371	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6930859	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6936504	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938580	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751390	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs881681	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9349053	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369033	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380716	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9462380	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9470762	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470767	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9470800	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38045600-38107000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:38053000-38090400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:38057200-38109200	Weak transcription	K562	blood
4	chr6:38059800-38091600	Weak transcription	Spleen	Spleen
5	chr6:38060000-38092000	Weak transcription	Aorta	Aorta
6	chr6:38060000-38099400	Weak transcription	Right Ventricle	heart
7	chr6:38060000-38108200	Weak transcription	Ovary	ovary
8	chr6:38063800-38099000	Weak transcription	NH-A	brain
9	chr6:38071800-38091400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:38072200-38108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:38075200-38092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:38075200-38118200	Weak transcription	Colonic Mucosa	Colon
13	chr6:38075400-38103800	Weak transcription	Pancreas	Pancrea
14	chr6:38076400-38091400	Strong transcription	Primary B cells from cord blood	blood
15	chr6:38076600-38104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:38078800-38099000	Weak transcription	NHDF-Ad	bronchial
17	chr6:38078800-38109000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:38078800-38111000	Weak transcription	Fetal Kidney	kidney
19	chr6:38078800-38111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:38079600-38113800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:38080400-38104800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:38081800-38121800	Weak transcription	Psoas Muscle	Psoas
23	chr6:38082600-38094400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:38082800-38091600	Strong transcription	Primary T cells from cord blood	blood
25	chr6:38083200-38095800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:38083400-38091600	Weak transcription	Small Intestine	intestine
27	chr6:38083600-38091400	Strong transcription	HepG2	liver
28	chr6:38083600-38092600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:38083600-38094000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr6:38083800-38091600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:38083800-38092000	Strong transcription	Fetal Thymus	thymus
32	chr6:38083800-38103800	Weak transcription	Esophagus	oesophagus
33	chr6:38084000-38091200	Strong transcription	Dnd41	blood
34	chr6:38084000-38122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:38084200-38089200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:38084200-38089600	Strong transcription	Placenta	Placenta
37	chr6:38084200-38091400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:38084200-38091600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:38084200-38092200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:38084200-38095200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:38084400-38089600	Weak transcription	NHEK	skin
42	chr6:38084400-38090200	Strong transcription	Adipose Nuclei	Adipose
43	chr6:38084400-38091200	Strong transcription	Fetal Intestine Large	intestine
44	chr6:38084400-38091400	Strong transcription	Liver	Liver
45	chr6:38084400-38092000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:38084400-38092200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:38084600-38089200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:38084600-38092000	Weak transcription	Lung	lung
49	chr6:38084600-38124200	Weak transcription	Hela-S3	cervix
50	chr6:38084800-38092400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links