Variant report

Variant	rs6916091
Chromosome Location	chr6:38091750-38091751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10755700	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885325	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1923279	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506034	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4714123	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4714125	0.85[ASN][1000 genomes]
rs6458040	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6458042	0.99[ASN][1000 genomes]
rs6924634	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6929371	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6930859	0.83[ASN][1000 genomes]
rs6936504	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938580	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751390	0.94[ASN][1000 genomes]
rs881681	0.91[ASN][1000 genomes]
rs9349053	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369033	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380716	0.84[ASN][1000 genomes]
rs9462380	0.94[ASN][1000 genomes]
rs9470762	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470767	0.94[ASN][1000 genomes]
rs9470800	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38045600-38107000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:38057200-38109200	Weak transcription	K562	blood
3	chr6:38060000-38092000	Weak transcription	Aorta	Aorta
4	chr6:38060000-38099400	Weak transcription	Right Ventricle	heart
5	chr6:38060000-38108200	Weak transcription	Ovary	ovary
6	chr6:38063800-38099000	Weak transcription	NH-A	brain
7	chr6:38072200-38108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:38075200-38092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:38075200-38118200	Weak transcription	Colonic Mucosa	Colon
10	chr6:38075400-38103800	Weak transcription	Pancreas	Pancrea
11	chr6:38076600-38104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:38078800-38099000	Weak transcription	NHDF-Ad	bronchial
13	chr6:38078800-38109000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:38078800-38111000	Weak transcription	Fetal Kidney	kidney
15	chr6:38078800-38111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:38079600-38113800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:38080400-38104800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:38081800-38121800	Weak transcription	Psoas Muscle	Psoas
19	chr6:38082600-38094400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:38083200-38095800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:38083600-38092600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:38083600-38094000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:38083800-38092000	Strong transcription	Fetal Thymus	thymus
24	chr6:38083800-38103800	Weak transcription	Esophagus	oesophagus
25	chr6:38084000-38122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:38084200-38092200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:38084200-38095200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:38084400-38092000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:38084400-38092200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:38084600-38092000	Weak transcription	Lung	lung
31	chr6:38084600-38124200	Weak transcription	Hela-S3	cervix
32	chr6:38084800-38092400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:38085400-38093800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:38085600-38092000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:38085800-38099400	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:38086000-38092400	Weak transcription	HUVEC	blood vessel
37	chr6:38086200-38093400	Weak transcription	A549	lung
38	chr6:38086400-38099200	Weak transcription	NHLF	lung
39	chr6:38086600-38102400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:38086800-38092400	Weak transcription	Thymus	Thymus
41	chr6:38087000-38095800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:38087200-38101600	Weak transcription	Brain Angular Gyrus	brain
43	chr6:38087400-38092600	Strong transcription	Fetal Stomach	stomach
44	chr6:38087400-38093800	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:38087600-38092000	Weak transcription	Brain Germinal Matrix	brain
46	chr6:38087600-38099400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:38087600-38100400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:38087600-38101800	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:38087600-38103800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:38087600-38104800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links