Variant report

Variant	rs10756027
Chromosome Location	chr9:10338320-10338321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10114902	0.98[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10118721	0.82[AMR][1000 genomes]
rs10123173	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10123946	0.80[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10123985	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10511544	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10756025	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756026	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756028	0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10809060	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs10809070	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10809071	0.88[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10959014	0.89[CEU][hapmap]
rs10959015	0.83[CEU][hapmap]
rs10959016	0.84[CEU][hapmap]
rs10959026	0.89[CEU][hapmap]
rs10959043	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10959045	0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10959049	0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs10959050	0.81[AMR][1000 genomes]
rs12000957	0.86[AMR][1000 genomes]
rs12000959	0.86[AMR][1000 genomes]
rs12344926	0.84[CEU][hapmap]
rs1323498	0.89[CEU][hapmap]
rs1323499	0.85[GIH][hapmap];0.81[JPT][hapmap]
rs1323500	0.89[CEU][hapmap]
rs1407925	0.89[CEU][hapmap]
rs1590347	0.89[CHB][hapmap]
rs1924084	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs587791	0.95[MEX][hapmap]
rs597087	0.82[JPT][hapmap]
rs600075	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs603924	0.89[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap]
rs605257	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap]
rs605318	0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap]
rs609528	0.81[JPT][hapmap]
rs616040	0.89[CEU][hapmap]
rs617900	0.82[JPT][hapmap]
rs629243	0.82[JPT][hapmap]
rs633062	0.82[JPT][hapmap]
rs635858	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs638180	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs679856	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs680760	0.89[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs694201	0.89[CEU][hapmap]
rs694209	0.89[CEU][hapmap]
rs7045899	0.81[YRI][hapmap]
rs7851619	0.83[AMR][1000 genomes]
rs7854874	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7871892	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs880634	0.89[CEU][hapmap]
rs942158	0.89[CEU][hapmap]
rs942159	0.82[JPT][hapmap]
rs9657580	0.89[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9987444	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9987798	0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9987808	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9987891	0.89[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892315	chr9:10338320-10484849	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10333600-10339400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:10338000-10339000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:10338200-10338400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr9:10338200-10338400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:10338200-10339000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:10338200-10339000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr9:10338200-10339000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:10338200-10339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr9:10338200-10339200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr9:10338200-10340400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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