Variant report

Variant	rs10756028
Chromosome Location	chr9:10339482-10339483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114902	0.83[AMR][1000 genomes]
rs10118721	0.83[AMR][1000 genomes]
rs10123173	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10123946	0.83[AFR][1000 genomes]
rs10511544	0.91[JPT][hapmap]
rs10756025	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10756026	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756027	0.82[JPT][hapmap]
rs10809060	0.80[JPT][hapmap]
rs10809070	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10809071	0.92[CHB][hapmap];0.87[AFR][1000 genomes]
rs10959043	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10959045	0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10959049	0.83[AMR][1000 genomes]
rs10959050	0.82[AMR][1000 genomes]
rs12000957	0.87[AMR][1000 genomes]
rs12000959	0.87[AMR][1000 genomes]
rs1323499	0.90[JPT][hapmap]
rs1924084	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs587791	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs597087	0.80[JPT][hapmap]
rs603924	0.90[JPT][hapmap]
rs605257	0.80[JPT][hapmap]
rs612312	0.89[JPT][hapmap]
rs617900	0.80[JPT][hapmap]
rs629243	0.80[JPT][hapmap]
rs633062	0.80[JPT][hapmap]
rs635858	0.80[JPT][hapmap]
rs638180	0.80[JPT][hapmap]
rs679856	0.91[JPT][hapmap]
rs680760	0.90[JPT][hapmap]
rs7851619	0.84[AMR][1000 genomes]
rs7854874	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs942159	0.80[JPT][hapmap]
rs9657580	0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9987444	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9987798	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987808	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987891	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892315	chr9:10338320-10484849	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10338200-10340400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr9:10338600-10340400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:10339000-10339600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:10339000-10339600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr9:10339000-10339600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:10339000-10339600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr9:10339000-10339800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr9:10339000-10339800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:10339400-10340200	Enhancers	Pancreatic Islets	Pancreatic Islet

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