Variant report

Variant	rs10756395
Chromosome Location	chr9:12723937-12723938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:12723685..12724314-chr9:12988034..12988919,3	MCF-7	breast:
2	chr9:12723451..12724539-chr9:12884675..12885414,3	MCF-7	breast:
3	chr9:12723856..12726602-chr9:12884690..12886916,2	MCF-7	breast:
4	chr9:12723429..12724424-chr9:12884471..12885741,6	MCF-7	breast:
5	chr9:12722041..12725292-chr9:12774361..12778280,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222658	Chromatin interaction
ENSG00000153714	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10491744	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756405	0.83[AMR][1000 genomes]
rs10809829	0.85[AMR][1000 genomes]
rs10960758	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10960759	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10960760	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10960761	0.84[AMR][1000 genomes]
rs10960762	0.87[AMR][1000 genomes]
rs10960764	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10960765	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10960774	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10960775	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1134311	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1137134	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11789751	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11829	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12115198	0.81[AMR][1000 genomes]
rs12379024	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12379260	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1326797	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1326798	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13284445	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13284453	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13284467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13284898	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13288130	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13288475	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13288636	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13288681	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13295868	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13302551	0.84[AMR][1000 genomes]
rs1409626	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1409629	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1409630	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2209269	0.81[EUR][1000 genomes]
rs2209271	0.80[EUR][1000 genomes]
rs2382361	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733832	0.83[EUR][1000 genomes]
rs2890965	0.81[EUR][1000 genomes]
rs7019226	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7021368	0.82[AMR][1000 genomes]
rs7023927	0.83[AMR][1000 genomes]
rs7025812	0.82[AMR][1000 genomes]
rs7030485	0.85[AMR][1000 genomes]
rs7466623	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs910	0.81[AMR][1000 genomes]
rs958073	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759671	chr9:12235048-12784092	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1034393	chr9:12278703-12798236	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv869288	chr9:12286919-12816766	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv1029415	chr9:12424340-12794623	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv540064	chr9:12424340-12794623	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv2758182	chr9:12621991-12784092	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv613613	chr9:12641987-12773263	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1030835	chr9:12717405-12840928	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	esv2757318	chr9:12721881-12758881	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12719200-12740400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:12720800-12724400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:12722600-12725000	Enhancers	A549	lung
4	chr9:12722800-12724400	Enhancers	NHEK	skin
5	chr9:12723000-12725000	Enhancers	Fetal Lung	lung
6	chr9:12723800-12726000	Weak transcription	Rectal Mucosa Donor 31	rectum

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