Variant report

Variant	rs10756461
Chromosome Location	chr9:13185149-13185150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10116749	0.83[TSI][hapmap]
rs1038979	1.00[YRI][hapmap]
rs10511577	0.83[TSI][hapmap]
rs10738325	0.80[TSI][hapmap]
rs10756460	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756465	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10809920	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs10960970	0.88[EUR][1000 genomes]
rs12351444	0.83[CHB][hapmap]
rs1330129	1.00[YRI][hapmap]
rs1331668	0.80[TSI][hapmap]
rs1331670	0.80[TSI][hapmap]
rs1331673	0.83[CHB][hapmap]
rs1331674	0.83[CHB][hapmap]
rs1331675	0.89[ASW][hapmap];0.88[CEU][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1556421	0.84[CEU][hapmap];0.82[CHB][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17273898	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1854908	0.82[TSI][hapmap]
rs1854909	0.80[TSI][hapmap]
rs1929541	0.85[TSI][hapmap]
rs1999393	0.83[CHB][hapmap]
rs1999395	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2225483	0.85[TSI][hapmap]
rs3780576	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs3780577	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs4741291	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474754	0.83[TSI][hapmap]
rs72706366	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7859465	0.85[TSI][hapmap]
rs7863888	0.88[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13121600-13225200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:13122600-13186400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:13135400-13223600	Weak transcription	Lung	lung
4	chr9:13136000-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:13138800-13191800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:13139000-13188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:13141000-13197800	Weak transcription	NHDF-Ad	bronchial
8	chr9:13141200-13188200	Weak transcription	NHLF	lung
9	chr9:13143600-13202200	Weak transcription	Pancreas	Pancrea
10	chr9:13145400-13203200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:13146600-13202400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:13150000-13193200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:13153200-13194800	Weak transcription	Fetal Kidney	kidney
15	chr9:13156800-13201400	Weak transcription	Psoas Muscle	Psoas
16	chr9:13158800-13188800	Weak transcription	Fetal Heart	heart
17	chr9:13161600-13188200	Weak transcription	Fetal Stomach	stomach
18	chr9:13162200-13188200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:13163600-13202000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:13164200-13188000	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:13164200-13188800	Weak transcription	Brain Substantia Nigra	brain
22	chr9:13164200-13248600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:13164200-13258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:13165800-13187400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:13168000-13201800	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:13168400-13188200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:13168600-13188200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:13170000-13188200	Weak transcription	Left Ventricle	heart
29	chr9:13173000-13188800	Weak transcription	Spleen	Spleen
30	chr9:13175200-13188200	Weak transcription	Aorta	Aorta
31	chr9:13175800-13203000	Weak transcription	Fetal Intestine Small	intestine
32	chr9:13176200-13187800	Weak transcription	Placenta	Placenta
33	chr9:13176400-13186800	Weak transcription	Ovary	ovary
34	chr9:13176400-13187000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:13176400-13187600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:13176400-13187800	Weak transcription	Osteobl	bone
37	chr9:13176400-13188200	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:13176400-13188800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:13176400-13202600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:13176600-13191800	Weak transcription	Fetal Intestine Large	intestine
41	chr9:13177600-13197400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:13179800-13196600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:13180000-13188200	Weak transcription	Brain Angular Gyrus	brain
44	chr9:13180000-13193000	Weak transcription	HSMMtube	muscle
45	chr9:13180000-13202200	Weak transcription	Fetal Brain Female	brain
46	chr9:13180200-13188200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:13180400-13185800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr9:13182000-13187800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:13182000-13188200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:13182000-13188400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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