Variant report

Variant	rs10756484
Chromosome Location	chr9:13590354-13590355
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13589369..13591855-chr9:13595557..13598165,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10123240	0.86[EUR][1000 genomes]
rs1029138	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029139	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029140	0.97[ASN][1000 genomes]
rs10738337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756486	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756487	0.85[EUR][1000 genomes]
rs10756488	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10809989	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10809990	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10809991	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10809992	0.87[EUR][1000 genomes]
rs10961157	0.87[EUR][1000 genomes]
rs10961159	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961160	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961161	0.86[EUR][1000 genomes]
rs2151659	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5009182	0.95[ASN][1000 genomes]
rs5009183	0.95[ASN][1000 genomes]
rs5009184	0.95[ASN][1000 genomes]
rs5009185	0.87[EUR][1000 genomes]
rs5009186	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13586400-13591000	Enhancers	Fetal Lung	lung
2	chr9:13586400-13592000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:13586600-13591200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:13586800-13590400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:13586800-13592000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:13587000-13591000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:13587000-13591000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:13587200-13590400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:13587200-13591800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:13587600-13596600	Weak transcription	NH-A	brain
11	chr9:13588000-13591200	Weak transcription	Right Ventricle	heart
12	chr9:13588200-13590400	Weak transcription	Fetal Heart	heart
13	chr9:13588600-13590600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:13588600-13590600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:13588600-13590600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:13588800-13590800	Weak transcription	Brain Angular Gyrus	brain
17	chr9:13588800-13596200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:13588800-13596200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:13588800-13599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:13589000-13596200	Weak transcription	Psoas Muscle	Psoas
21	chr9:13589600-13590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:13589600-13590800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:13589600-13591400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:13589800-13591400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:13589800-13596200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:13590000-13590600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:13590000-13590600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:13590000-13591000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:13590000-13591000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr9:13590200-13590400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links