Variant report

Variant	rs5009185
Chromosome Location	chr9:13592591-13592592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10123240	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1029138	0.91[EUR][1000 genomes]
rs1029139	0.90[EUR][1000 genomes]
rs10738337	0.87[EUR][1000 genomes]
rs10756484	0.87[EUR][1000 genomes]
rs10756485	0.87[EUR][1000 genomes]
rs10756487	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756488	0.89[EUR][1000 genomes]
rs10809989	0.90[EUR][1000 genomes]
rs10809990	0.90[EUR][1000 genomes]
rs10809991	0.90[EUR][1000 genomes]
rs10809992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10961159	0.90[EUR][1000 genomes]
rs10961160	0.90[EUR][1000 genomes]
rs10961161	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2151659	0.90[EUR][1000 genomes]
rs5009186	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13587600-13596600	Weak transcription	NH-A	brain
2	chr9:13588800-13596200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:13588800-13596200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:13588800-13599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:13589000-13596200	Weak transcription	Psoas Muscle	Psoas
6	chr9:13589800-13596200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:13590400-13596200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:13590600-13596000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:13590600-13596600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:13591000-13596200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:13591000-13596600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:13591200-13596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:13591400-13596400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:13592000-13596200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links