Variant report

Variant	rs10757022
Chromosome Location	chr9:19023613-19023614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10757004	0.81[CHD][hapmap]
rs10757018	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs10811075	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs10811080	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs10811082	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10811085	0.92[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs10811092	0.81[JPT][hapmap]
rs10811099	0.88[ASW][hapmap];0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap]
rs10963896	0.92[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs10963897	0.91[CEU][hapmap];0.91[CHB][hapmap]
rs10963898	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs10963907	0.88[ASW][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.88[MKK][hapmap]
rs10963910	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs10963911	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs10963912	0.87[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs11790123	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs12352657	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12352756	0.82[CHB][hapmap]
rs12553946	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs13284512	0.83[CEU][hapmap]
rs17236081	0.82[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap]
rs1932445	0.87[CHB][hapmap]
rs1932452	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1932453	0.82[CHB][hapmap]
rs1977444	0.81[CHD][hapmap]
rs2152464	0.88[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.80[TSI][hapmap]
rs3892045	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs4506313	0.82[CHB][hapmap]
rs4977273	0.82[CHB][hapmap]
rs4977482	0.81[CHD][hapmap]
rs6475299	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6475300	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7024697	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs7025123	0.91[CEU][hapmap];0.91[CHB][hapmap]
rs7028858	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7028936	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7037837	0.91[CEU][hapmap];0.91[CHB][hapmap]
rs7038730	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap]
rs7852907	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs7857590	0.83[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs7862694	0.82[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap]
rs7864376	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs7867428	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7871205	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7871456	0.82[CHB][hapmap]
rs7871505	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7875035	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs883439	0.88[ASW][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.88[MKK][hapmap]
rs953734	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10757022	COCH	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19022800-19024200	Enhancers	Fetal Lung	lung

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