Variant report

Variant	rs1932445
Chromosome Location	chr9:18979441-18979442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1006120	0.82[MEX][hapmap]
rs10116436	0.84[ASN][1000 genomes]
rs10122088	0.85[JPT][hapmap]
rs10125038	0.84[ASN][1000 genomes]
rs10757007	0.82[CHD][hapmap]
rs10757008	0.82[CHD][hapmap]
rs10757012	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757016	0.83[CHB][hapmap]
rs10757018	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10757022	0.87[CHB][hapmap]
rs10811073	0.89[ASN][1000 genomes]
rs10811074	0.89[ASN][1000 genomes]
rs10811075	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10811076	0.84[ASN][1000 genomes]
rs10811078	0.85[ASN][1000 genomes]
rs10811079	0.85[ASN][1000 genomes]
rs10811080	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10811081	0.85[ASN][1000 genomes]
rs10811082	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10811083	0.83[ASN][1000 genomes]
rs10811084	0.83[ASN][1000 genomes]
rs10811085	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10811092	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs10811099	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10963894	0.84[ASN][1000 genomes]
rs10963896	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10963897	0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs10963898	0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10963907	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10963910	0.85[JPT][hapmap]
rs10963911	0.80[JPT][hapmap]
rs11790123	0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12349207	0.81[JPT][hapmap]
rs12352657	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12352756	0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12553946	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1344007	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs17236081	0.82[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1887444	0.82[CHD][hapmap]
rs1932447	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1932448	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs1932449	0.88[ASN][1000 genomes]
rs1932452	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1932453	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2039010	0.82[MEX][hapmap]
rs2152463	0.82[ASN][1000 genomes]
rs2152464	0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2184656	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2383082	0.84[ASN][1000 genomes]
rs2383083	0.84[ASN][1000 genomes]
rs3892045	0.84[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4395970	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4419893	0.81[CHD][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4506313	0.86[CHB][hapmap]
rs4977273	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4977476	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs4977482	0.81[CHB][hapmap];0.93[CHD][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs6475276	0.86[MEX][hapmap]
rs6475292	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475294	0.82[CHB][hapmap];0.85[CHD][hapmap];0.86[MEX][hapmap]
rs6475295	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475296	0.82[CHB][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap]
rs6475297	0.82[CHB][hapmap]
rs6475298	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs6475299	0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6475300	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6475301	0.92[ASN][1000 genomes]
rs6475305	0.85[ASN][1000 genomes]
rs6475306	0.82[ASN][1000 genomes]
rs7020294	0.83[ASN][1000 genomes]
rs7021572	0.84[CHD][hapmap]
rs7022960	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7024697	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7025123	0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7028858	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7028936	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7034201	0.82[CHB][hapmap]
rs7037837	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7038730	0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7848918	0.86[MEX][hapmap]
rs7848929	0.83[ASN][1000 genomes]
rs7852907	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7856117	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7857590	0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7858618	0.85[JPT][hapmap]
rs7862694	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs7864376	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7864909	0.83[ASN][1000 genomes]
rs7864930	0.85[ASN][1000 genomes]
rs7867428	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7870547	0.84[ASN][1000 genomes]
rs7871030	0.87[ASN][1000 genomes]
rs7871205	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7871450	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7871456	0.87[CHB][hapmap];0.82[CHD][hapmap]
rs7871505	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7875035	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs883439	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs953734	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1932445	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18981600	Weak transcription	Gastric	stomach
2	chr9:18975000-18980600	Enhancers	Fetal Thymus	thymus
3	chr9:18976800-18979600	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:18977000-18979800	Weak transcription	Fetal Heart	heart
5	chr9:18977000-18980000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:18977000-18981400	Weak transcription	Adipose Nuclei	Adipose
7	chr9:18977000-18981400	Weak transcription	Aorta	Aorta
8	chr9:18977000-18981400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:18977000-18982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:18977200-18980200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:18977200-18980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:18977200-18982200	Weak transcription	NHEK	skin
13	chr9:18977400-18979600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:18977400-18979600	Weak transcription	Fetal Kidney	kidney
15	chr9:18977400-18979600	Weak transcription	Fetal Stomach	stomach
16	chr9:18977400-18979800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:18977400-18979800	Weak transcription	Stomach Mucosa	stomach
18	chr9:18978800-18981800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:18979200-18980600	Enhancers	NHDF-Ad	bronchial
20	chr9:18979400-18979600	Enhancers	Fetal Muscle Trunk	muscle
21	chr9:18979400-18979600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:18979400-18979800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:18979400-18979800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:18979400-18979800	Enhancers	Left Ventricle	heart
25	chr9:18979400-18979800	Enhancers	Lung	lung
26	chr9:18979400-18980000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:18979400-18980200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr9:18979400-18980400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:18979400-18980400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:18979400-18980400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:18979400-18980400	Enhancers	Fetal Muscle Leg	muscle
32	chr9:18979400-18980400	Enhancers	Ovary	ovary
33	chr9:18979400-18980400	Enhancers	HUVEC	blood vessel
34	chr9:18979400-18980400	Enhancers	NHLF	lung
35	chr9:18979400-18980600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:18979400-18980600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:18979400-18980600	Enhancers	Right Atrium	heart
38	chr9:18979400-18980800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:18979400-18982000	Enhancers	Fetal Lung	lung
40	chr9:18979400-18982800	Enhancers	Osteobl	bone

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