Variant report
Variant | rs7858618 |
---|---|
Chromosome Location | chr9:19007561-19007562 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10122088 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10757020 | 0.86[CHB][hapmap];0.84[JPT][hapmap] |
rs10811080 | 0.81[JPT][hapmap] |
rs10811082 | 0.81[JPT][hapmap] |
rs10811085 | 0.80[JPT][hapmap] |
rs10811092 | 0.81[JPT][hapmap] |
rs10811099 | 0.81[JPT][hapmap] |
rs10811101 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10963896 | 0.80[JPT][hapmap] |
rs10963907 | 0.81[JPT][hapmap] |
rs10963911 | 0.80[JPT][hapmap] |
rs11496357 | 0.91[ASN][1000 genomes] |
rs12349207 | 0.86[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12352657 | 0.81[JPT][hapmap] |
rs1344007 | 0.81[JPT][hapmap] |
rs1932445 | 0.85[JPT][hapmap] |
rs1932449 | 0.84[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rs2039011 | 0.81[CHB][hapmap] |
rs2184656 | 0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2291503 | 0.84[ASW][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap] |
rs4367642 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4434706 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4506313 | 0.83[CHD][hapmap] |
rs4977482 | 0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes] |
rs4977488 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6415731 | 0.84[ASW][hapmap] |
rs6475272 | 0.82[CHB][hapmap] |
rs6475273 | 0.82[CHB][hapmap] |
rs6475294 | 0.81[TSI][hapmap] |
rs6475296 | 0.81[TSI][hapmap] |
rs6475298 | 0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
rs6475299 | 0.81[JPT][hapmap] |
rs6475300 | 0.81[JPT][hapmap] |
rs6475303 | 0.93[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7019163 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7021907 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7025258 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs7030791 | 0.95[CHB][hapmap];0.94[JPT][hapmap] |
rs7042382 | 0.86[CHB][hapmap] |
rs7045203 | 0.81[CHB][hapmap] |
rs7864665 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7867428 | 0.81[JPT][hapmap] |
rs7871505 | 0.84[JPT][hapmap] |
rs7874721 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7874786 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7875035 | 0.81[JPT][hapmap] |
rs9298798 | 0.82[CHB][hapmap];0.89[MEX][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv491807 | chr9:18243672-19009770 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv525659 | chr9:18288212-19009041 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
3 | nsv892692 | chr9:18519699-19045502 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1017820 | chr9:18882219-19587377 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
5 | nsv540078 | chr9:18882219-19587377 | Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
6 | nsv892699 | chr9:18945868-19025693 | Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1022697 | chr9:18951530-19010894 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv892700 | chr9:18979441-19156784 | Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
9 | nsv892701 | chr9:18999837-19032907 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:19007200-19008000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
2 | chr9:19007400-19008000 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr9:19007400-19008000 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |