Variant report

Variant	rs7030791
Chromosome Location	chr9:19014915-19014916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1006120	0.85[CHB][hapmap]
rs10122088	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10757018	0.82[CHB][hapmap]
rs10757020	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10811085	0.80[JPT][hapmap]
rs10811099	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10811101	0.93[ASN][1000 genomes]
rs10963896	0.80[JPT][hapmap]
rs10963907	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10963910	0.83[CHB][hapmap]
rs10963911	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs10963912	0.81[CHB][hapmap]
rs11496357	0.89[ASN][1000 genomes]
rs12349207	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12352756	0.81[JPT][hapmap]
rs12553946	0.83[CHB][hapmap]
rs17236081	0.82[CHB][hapmap]
rs1932448	0.81[CHB][hapmap]
rs1932449	0.84[ASN][1000 genomes]
rs1932452	0.83[CHB][hapmap]
rs1932453	0.83[CHB][hapmap]
rs2039008	0.86[CHB][hapmap]
rs2039010	0.85[CHB][hapmap]
rs2039011	0.91[CHB][hapmap]
rs2184656	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2291503	0.90[CHB][hapmap]
rs3892045	0.82[CHB][hapmap]
rs4367642	0.87[ASN][1000 genomes]
rs4434706	0.86[ASN][1000 genomes]
rs4483249	0.82[ASN][1000 genomes]
rs4977476	0.81[CHB][hapmap]
rs4977482	0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4977488	0.87[ASN][1000 genomes]
rs6475272	0.90[CHB][hapmap]
rs6475273	0.90[CHB][hapmap]
rs6475274	0.86[CHB][hapmap]
rs6475275	0.86[CHB][hapmap]
rs6475276	0.85[CHB][hapmap]
rs6475279	0.84[CHB][hapmap]
rs6475294	0.81[CHB][hapmap]
rs6475296	0.81[CHB][hapmap]
rs6475297	0.82[CHB][hapmap]
rs6475298	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6475303	0.92[ASN][1000 genomes]
rs7019163	0.87[ASN][1000 genomes]
rs7021907	0.86[ASN][1000 genomes]
rs7025258	0.86[ASN][1000 genomes]
rs7028706	0.85[CHB][hapmap]
rs7034201	0.82[CHB][hapmap]
rs7042382	0.95[CHB][hapmap]
rs7044864	0.85[CHB][hapmap]
rs7045203	0.90[CHB][hapmap]
rs7848918	0.85[CHB][hapmap]
rs7858618	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7862694	0.82[CHB][hapmap]
rs7864665	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7874721	0.86[ASN][1000 genomes]
rs7874786	0.87[ASN][1000 genomes]
rs883439	0.82[CHB][hapmap]
rs9298798	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7030791	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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