Variant report

Variant	rs7042382
Chromosome Location	chr9:19110467-19110468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10122088	0.86[CHB][hapmap]
rs10757016	0.82[CHB][hapmap]
rs10757018	0.86[CHB][hapmap]
rs10757020	0.85[CHB][hapmap]
rs10811099	0.81[CHB][hapmap]
rs10963907	0.81[CHB][hapmap]
rs11791709	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12349207	0.86[CHB][hapmap]
rs12553946	0.82[CHB][hapmap]
rs17236081	0.81[CHB][hapmap]
rs1932452	0.82[CHB][hapmap]
rs1932453	0.82[CHB][hapmap]
rs2039011	0.86[CHB][hapmap]
rs2184656	0.80[CHB][hapmap]
rs2291503	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs3802335	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs3892045	0.81[CHB][hapmap]
rs4395970	0.82[CHB][hapmap]
rs4977280	0.86[CEU][hapmap]
rs4977476	0.81[CHB][hapmap]
rs6415731	0.86[CEU][hapmap]
rs6475272	0.81[CHB][hapmap]
rs6475273	0.81[CHB][hapmap]
rs7030791	0.95[CHB][hapmap]
rs7032119	0.84[ASN][1000 genomes]
rs7045203	0.86[CHB][hapmap]
rs7847408	0.85[ASN][1000 genomes]
rs7858618	0.86[CHB][hapmap]
rs7862694	0.81[CHB][hapmap]
rs883439	0.81[CHB][hapmap]
rs9298798	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv430003	chr9:19074740-19247826	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv870340	chr9:19077714-19143230	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018947	chr9:19094894-19394712	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
9	nsv1033552	chr9:19104662-19131866	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7042382	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19103000-19113800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:19103400-19111800	Weak transcription	Left Ventricle	heart
3	chr9:19103400-19114000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:19103400-19114000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:19103400-19114000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:19103400-19114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:19103400-19114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:19103400-19114200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:19103400-19114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:19103400-19114400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:19103400-19114400	Weak transcription	Lung	lung
12	chr9:19103400-19114600	Weak transcription	NHLF	lung
13	chr9:19103400-19114800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:19103400-19114800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:19103400-19114800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:19103400-19114800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:19103400-19114800	Weak transcription	Brain Substantia Nigra	brain
18	chr9:19103400-19114800	Weak transcription	HSMM	muscle
19	chr9:19103400-19114800	Weak transcription	NHDF-Ad	bronchial
20	chr9:19103400-19115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:19103400-19115400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:19103400-19115600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:19103400-19115600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:19103400-19115600	Weak transcription	Fetal Lung	lung
25	chr9:19103400-19115600	Weak transcription	Ovary	ovary
26	chr9:19103400-19115800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:19103400-19115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:19103400-19115800	Weak transcription	Gastric	stomach
29	chr9:19103400-19116000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:19103400-19116000	Weak transcription	Brain Germinal Matrix	brain
31	chr9:19103400-19116000	Weak transcription	Small Intestine	intestine
32	chr9:19103400-19116200	Weak transcription	Aorta	Aorta
33	chr9:19103400-19116200	Weak transcription	Esophagus	oesophagus
34	chr9:19103400-19120200	Weak transcription	Pancreas	Pancrea
35	chr9:19103400-19126400	Weak transcription	Fetal Brain Male	brain
36	chr9:19103600-19111400	Weak transcription	Adipose Nuclei	Adipose
37	chr9:19103600-19113800	Weak transcription	Fetal Intestine Small	intestine
38	chr9:19103600-19114000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:19103600-19114000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:19103600-19114000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:19103600-19114000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:19103600-19114000	Weak transcription	Fetal Intestine Large	intestine
43	chr9:19103600-19114000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:19103600-19114000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:19103600-19114000	Weak transcription	Right Ventricle	heart
46	chr9:19103600-19114200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:19103600-19114200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr9:19103600-19114400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:19103600-19114400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr9:19103600-19114400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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