Variant report

Variant	rs2039011
Chromosome Location	chr9:18956544-18956545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006120	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10122088	0.82[CHB][hapmap]
rs10738524	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10757011	0.83[CHB][hapmap]
rs10757012	0.80[ASN][1000 genomes]
rs10757020	0.81[CHB][hapmap]
rs10963863	0.83[CHB][hapmap]
rs12349207	0.81[CHB][hapmap]
rs12686643	0.88[ASN][1000 genomes]
rs1344007	0.82[JPT][hapmap]
rs1932448	0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1977444	0.83[CHB][hapmap]
rs2039008	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2039010	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2291503	0.86[CHB][hapmap]
rs4278231	0.81[ASN][1000 genomes]
rs4977269	0.93[ASN][1000 genomes]
rs4977270	0.93[ASN][1000 genomes]
rs4977476	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs4977478	0.93[ASN][1000 genomes]
rs6475272	0.91[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs6475273	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6475274	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs6475275	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6475276	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6475277	0.93[ASN][1000 genomes]
rs6475279	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6475292	0.81[ASN][1000 genomes]
rs6475293	0.88[ASN][1000 genomes]
rs6475294	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6475295	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6475296	0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs6475297	0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7025581	0.90[ASN][1000 genomes]
rs7028706	0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs7030791	0.91[CHB][hapmap]
rs7034201	0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7036652	0.81[ASN][1000 genomes]
rs7041732	0.88[ASN][1000 genomes]
rs7042382	0.86[CHB][hapmap]
rs7044864	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7045203	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7848918	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7856117	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7858618	0.81[CHB][hapmap]
rs7865461	0.83[CHB][hapmap]
rs7871450	0.80[ASN][1000 genomes]
rs7871732	0.87[ASN][1000 genomes]
rs9298798	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv466282	chr9:18920357-18960393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv471289	chr9:18920357-18960393	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613727	chr9:18920357-18960393	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2039011	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18956000-18956600	Enhancers	Fetal Thymus	thymus

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