Variant report

Variant	rs10122088
Chromosome Location	chr9:19023846-19023847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10757018	0.82[JPT][hapmap]
rs10757020	0.86[CHB][hapmap]
rs10811085	0.82[JPT][hapmap]
rs10811099	0.86[JPT][hapmap]
rs10811101	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10963896	0.82[JPT][hapmap]
rs10963898	0.82[JPT][hapmap]
rs10963907	0.86[JPT][hapmap]
rs10963910	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10963911	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10963912	0.83[CHB][hapmap]
rs11496357	0.83[ASN][1000 genomes]
rs11790123	0.82[JPT][hapmap]
rs12349207	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12352756	0.82[JPT][hapmap]
rs12553946	0.82[JPT][hapmap]
rs17236081	0.82[JPT][hapmap]
rs1932445	0.85[JPT][hapmap]
rs1932452	0.83[JPT][hapmap]
rs1932453	0.83[JPT][hapmap]
rs2039011	0.82[CHB][hapmap]
rs2152464	0.82[JPT][hapmap]
rs2171956	0.81[EUR][1000 genomes]
rs2184656	0.94[JPT][hapmap]
rs2291503	0.93[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs3892045	0.82[JPT][hapmap]
rs4367642	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4395970	0.83[JPT][hapmap]
rs4434706	0.83[AMR][1000 genomes]
rs4483249	0.86[ASN][1000 genomes]
rs4506313	0.81[JPT][hapmap]
rs4977280	0.93[CEU][hapmap]
rs4977482	0.83[JPT][hapmap]
rs4977488	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6415731	0.93[CEU][hapmap]
rs6475272	0.82[CHB][hapmap]
rs6475273	0.82[CHB][hapmap]
rs6475298	0.80[JPT][hapmap]
rs6475303	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7019163	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7021907	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7024697	0.82[JPT][hapmap]
rs7025123	0.82[JPT][hapmap]
rs7025258	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7028858	0.82[JPT][hapmap]
rs7028936	0.82[JPT][hapmap]
rs7030791	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7038730	0.82[JPT][hapmap]
rs7042382	0.86[CHB][hapmap]
rs7045203	0.82[CHB][hapmap]
rs7852907	0.81[JPT][hapmap]
rs7857590	0.82[JPT][hapmap]
rs7858618	0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7862694	0.82[JPT][hapmap]
rs7864376	0.82[JPT][hapmap]
rs7864665	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7871505	0.80[JPT][hapmap]
rs7874721	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7874786	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs883439	0.82[JPT][hapmap]
rs9298798	0.93[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10122088	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19022800-19024200	Enhancers	Fetal Lung	lung

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