Variant report

Variant	rs2184656
Chromosome Location	chr9:18995765-18995766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10122088	0.94[JPT][hapmap]
rs10757016	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10757018	0.83[JPT][hapmap]
rs10811075	0.86[CHB][hapmap]
rs10811080	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs10811082	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10811085	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10811092	0.84[JPT][hapmap]
rs10811101	0.82[ASN][1000 genomes]
rs10963896	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs10963897	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs10963898	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10963910	0.82[JPT][hapmap]
rs11496357	0.80[ASN][1000 genomes]
rs11790123	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs12349207	0.88[JPT][hapmap]
rs12352657	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs12352756	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs12553946	0.83[JPT][hapmap]
rs17236081	0.83[JPT][hapmap]
rs1932445	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1932452	0.84[JPT][hapmap]
rs1932453	0.84[JPT][hapmap]
rs2152464	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2291503	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs3892045	0.83[JPT][hapmap]
rs4395970	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4506313	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4977273	0.85[CHB][hapmap]
rs4977476	0.81[CHB][hapmap]
rs6475295	0.90[CHB][hapmap]
rs6475297	0.81[CHB][hapmap]
rs6475298	0.80[CHB][hapmap]
rs6475299	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs6475300	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs6475301	0.81[ASN][1000 genomes]
rs6475303	0.86[ASN][1000 genomes]
rs6475304	0.86[ASN][1000 genomes]
rs7019163	0.81[ASN][1000 genomes]
rs7024697	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs7025123	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7028858	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7028936	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7030791	0.88[JPT][hapmap]
rs7034201	0.81[CHB][hapmap]
rs7037837	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7038730	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs7042382	0.80[CHB][hapmap]
rs7852907	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7856117	0.90[CHB][hapmap]
rs7857590	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs7858618	0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7862694	0.83[JPT][hapmap]
rs7864376	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs7864665	0.83[ASN][1000 genomes]
rs7867428	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7871205	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7871456	0.86[CHB][hapmap]
rs7871505	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7875035	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs883439	0.83[JPT][hapmap]
rs9298798	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs953734	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv1799697	chr9:18988418-18996642	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2184656	ADFP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18992200-18999200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:18993800-18997200	Weak transcription	Fetal Thymus	thymus
3	chr9:18994400-18996000	Enhancers	Fetal Muscle Leg	muscle

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