Variant report

Variant	rs10811073
Chromosome Location	chr9:18980850-18980851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10116436	0.92[ASN][1000 genomes]
rs10121747	0.88[ASN][1000 genomes]
rs10125038	0.92[ASN][1000 genomes]
rs10757018	0.90[ASN][1000 genomes]
rs10757021	0.84[ASN][1000 genomes]
rs10811074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811075	0.94[ASN][1000 genomes]
rs10811076	0.92[ASN][1000 genomes]
rs10811078	0.93[ASN][1000 genomes]
rs10811079	0.94[ASN][1000 genomes]
rs10811080	0.94[ASN][1000 genomes]
rs10811081	0.93[ASN][1000 genomes]
rs10811082	0.94[ASN][1000 genomes]
rs10811083	0.92[ASN][1000 genomes]
rs10811084	0.92[ASN][1000 genomes]
rs10811085	0.91[ASN][1000 genomes]
rs10811099	0.84[ASN][1000 genomes]
rs10811100	0.84[ASN][1000 genomes]
rs10963894	0.92[ASN][1000 genomes]
rs10963896	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10963897	0.92[ASN][1000 genomes]
rs10963898	0.90[ASN][1000 genomes]
rs10963907	0.84[ASN][1000 genomes]
rs10963910	0.83[ASN][1000 genomes]
rs10963911	0.83[ASN][1000 genomes]
rs11790123	0.97[ASN][1000 genomes]
rs12352657	0.92[ASN][1000 genomes]
rs12352756	0.91[ASN][1000 genomes]
rs12553946	0.90[ASN][1000 genomes]
rs13284512	0.86[ASN][1000 genomes]
rs17236081	0.90[ASN][1000 genomes]
rs1932445	0.89[ASN][1000 genomes]
rs1932447	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932449	0.84[ASN][1000 genomes]
rs1932452	0.90[ASN][1000 genomes]
rs1932453	0.90[ASN][1000 genomes]
rs2152463	0.90[ASN][1000 genomes]
rs2152464	0.91[ASN][1000 genomes]
rs2383082	0.92[ASN][1000 genomes]
rs2383083	0.92[ASN][1000 genomes]
rs35150512	0.84[ASN][1000 genomes]
rs3892045	0.90[ASN][1000 genomes]
rs4130084	0.86[ASN][1000 genomes]
rs4287026	0.81[ASN][1000 genomes]
rs4380900	0.84[ASN][1000 genomes]
rs4506313	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4977273	0.83[ASN][1000 genomes]
rs4977482	0.83[ASN][1000 genomes]
rs56254400	0.83[ASN][1000 genomes]
rs62560430	0.86[ASN][1000 genomes]
rs6475298	0.81[ASN][1000 genomes]
rs6475299	0.97[ASN][1000 genomes]
rs6475300	0.96[ASN][1000 genomes]
rs6475301	0.86[ASN][1000 genomes]
rs6475304	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6475305	0.93[ASN][1000 genomes]
rs6475306	0.90[ASN][1000 genomes]
rs66688010	0.86[ASN][1000 genomes]
rs7020294	0.91[ASN][1000 genomes]
rs7022960	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7024697	0.91[ASN][1000 genomes]
rs7025123	0.91[ASN][1000 genomes]
rs7028858	0.91[ASN][1000 genomes]
rs7028936	0.91[ASN][1000 genomes]
rs7029677	0.86[ASN][1000 genomes]
rs7037262	0.82[ASN][1000 genomes]
rs7037837	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7038730	0.92[ASN][1000 genomes]
rs7048386	0.84[ASN][1000 genomes]
rs7848929	0.91[ASN][1000 genomes]
rs7852907	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7856285	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7857590	0.92[ASN][1000 genomes]
rs7861842	0.83[ASN][1000 genomes]
rs7864376	0.91[ASN][1000 genomes]
rs7864909	0.92[ASN][1000 genomes]
rs7864930	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7867428	0.98[ASN][1000 genomes]
rs7870547	0.92[ASN][1000 genomes]
rs7871030	0.98[ASN][1000 genomes]
rs7871205	0.98[ASN][1000 genomes]
rs7871456	0.82[ASN][1000 genomes]
rs7871505	0.98[ASN][1000 genomes]
rs7875035	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs953734	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18981600	Weak transcription	Gastric	stomach
2	chr9:18977000-18981400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:18977000-18981400	Weak transcription	Aorta	Aorta
4	chr9:18977000-18981400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:18977000-18982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:18977200-18982200	Weak transcription	NHEK	skin
7	chr9:18978800-18981800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:18979400-18982000	Enhancers	Fetal Lung	lung
9	chr9:18979400-18982800	Enhancers	Osteobl	bone
10	chr9:18979600-18981000	Enhancers	Fetal Kidney	kidney
11	chr9:18979600-18981400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:18979600-18981800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:18979600-18982000	Enhancers	Fetal Stomach	stomach
14	chr9:18979800-18981400	Weak transcription	Left Ventricle	heart
15	chr9:18979800-18981600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:18979800-18981800	Weak transcription	Esophagus	oesophagus
17	chr9:18979800-18982000	Weak transcription	Lung	lung
18	chr9:18979800-18982400	Enhancers	Fetal Heart	heart
19	chr9:18979800-18983000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr9:18980000-18981000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:18980200-18981000	Enhancers	Primary hematopoietic stem cells	blood
22	chr9:18980200-18981000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:18980400-18981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:18980400-18981400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:18980400-18981400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:18980400-18981400	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:18980400-18981400	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:18980400-18981600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:18980400-18981600	Weak transcription	Ovary	ovary
30	chr9:18980400-18982000	Weak transcription	NHLF	lung
31	chr9:18980400-18984400	Weak transcription	Stomach Mucosa	stomach
32	chr9:18980600-18981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:18980600-18981000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:18980600-18981000	Weak transcription	NHDF-Ad	bronchial
35	chr9:18980600-18981600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:18980600-18981600	Weak transcription	Fetal Thymus	thymus
37	chr9:18980600-18981800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:18980600-18981800	Weak transcription	Brain Anterior Caudate	brain
39	chr9:18980600-18981800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links