Variant report

Variant	rs10759031
Chromosome Location	chr9:9035800-9035801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10739183	0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10759032	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759034	1.00[CEU][hapmap]
rs10816037	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10816038	0.88[CEU][hapmap]
rs10816040	1.00[ASW][hapmap];0.91[GIH][hapmap];0.80[TSI][hapmap]
rs10816041	1.00[ASW][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs10977457	0.87[CEU][hapmap]
rs13294068	0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556420	1.00[ASW][hapmap];0.85[GIH][hapmap];0.84[MKK][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892248	chr9:9024254-9176176	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv892250	chr9:9032693-9125205	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9035000-9035800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:9035000-9035800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:9035200-9035800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:9035200-9036800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:9035400-9035800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:9035600-9035800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:9035600-9035800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr9:9035800-9037200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:9035800-9041800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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