Variant report

Variant	rs10759240
Chromosome Location	chr9:110242157-110242158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10739245	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739246	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10816518	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs13302327	0.85[EUR][1000 genomes]
rs1832741	0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs2051001	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110235600-110247600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:110235800-110248400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:110236000-110248400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:110240600-110243000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110241000-110242600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:110241400-110242600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:110241400-110242800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:110241600-110245800	Weak transcription	Stomach Mucosa	stomach
9	chr9:110241800-110242200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:110241800-110242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:110241800-110243000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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