Variant report

Variant	rs13302327
Chromosome Location	chr9:110263678-110263679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10739245	0.82[EUR][1000 genomes]
rs10739246	0.82[EUR][1000 genomes]
rs10759240	0.85[EUR][1000 genomes]
rs10816521	0.93[ASN][1000 genomes]
rs2051001	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4631527	0.90[ASN][1000 genomes]
rs6477574	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110255400-110264600	Weak transcription	A549	lung
2	chr9:110260000-110264400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:110260000-110264600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110261200-110265600	Weak transcription	HepG2	liver
5	chr9:110263200-110263800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:110263400-110266400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:110263600-110266400	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links