Variant report

Variant	rs10759829
Chromosome Location	chr9:118701699-118701700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10817848	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10817849	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10817852	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10817853	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10983013	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10983015	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10983024	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11999077	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12115454	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12237758	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12683184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62575980	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62575987	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62576005	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62576006	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6478214	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7846933	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7875978	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv831700	chr9:118683827-118834499	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118693600-118704000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118700200-118701800	Enhancers	NHLF	lung
3	chr9:118700400-118701800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:118700400-118707400	Enhancers	NHEK	skin
5	chr9:118700800-118702000	Enhancers	NH-A	brain
6	chr9:118700800-118702400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:118700800-118702600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:118700800-118709000	Enhancers	HMEC	breast
9	chr9:118701000-118702400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:118701000-118702400	Enhancers	Hela-S3	cervix
11	chr9:118701000-118702600	Enhancers	Osteobl	bone
12	chr9:118701000-118704000	Weak transcription	Placenta	Placenta
13	chr9:118701000-118706200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:118701000-118706400	Enhancers	NHDF-Ad	bronchial
15	chr9:118701200-118701800	Enhancers	HSMM	muscle
16	chr9:118701200-118702200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:118701200-118702400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:118701200-118706800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:118701400-118703800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:118701400-118703800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:118701600-118702200	Enhancers	A549	lung
22	chr9:118701600-118702600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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