Variant report

Variant	rs62575987
Chromosome Location	chr9:118705932-118705933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10759829	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10817848	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817849	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817852	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817853	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10983013	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10983015	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10983024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10983026	0.85[AMR][1000 genomes]
rs10983034	0.88[AMR][1000 genomes]
rs11999077	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12115454	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12237758	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683184	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34430503	0.85[AMR][1000 genomes]
rs35954601	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62575980	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62576005	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62576006	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62576008	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6478214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846933	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7875978	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv831700	chr9:118683827-118834499	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118700400-118707400	Enhancers	NHEK	skin
2	chr9:118700800-118709000	Enhancers	HMEC	breast
3	chr9:118701000-118706200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:118701000-118706400	Enhancers	NHDF-Ad	bronchial
5	chr9:118701200-118706800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:118703600-118707400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:118703800-118706000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:118703800-118706000	Enhancers	HepG2	liver
9	chr9:118703800-118706400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:118703800-118706400	Enhancers	Osteobl	bone
11	chr9:118703800-118707200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:118703800-118707400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:118703800-118707400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:118703800-118707600	Enhancers	Aorta	Aorta
15	chr9:118703800-118707800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:118703800-118707800	Enhancers	NHLF	lung
17	chr9:118703800-118708000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:118703800-118708200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:118704000-118706200	Enhancers	Hela-S3	cervix
20	chr9:118704000-118707600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:118704000-118707800	Enhancers	HSMM	muscle
22	chr9:118704200-118706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:118704200-118707000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:118704200-118708000	Enhancers	HSMMtube	muscle
25	chr9:118704400-118706000	Enhancers	A549	lung
26	chr9:118704400-118707200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:118704600-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:118705200-118706000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:118705200-118708200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:118705400-118706400	Enhancers	Fetal Lung	lung
31	chr9:118705400-118707800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:118705600-118707400	Enhancers	Brain Germinal Matrix	brain
33	chr9:118705600-118707600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr9:118705600-118707800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr9:118705600-118707800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:118705600-118707800	Enhancers	NH-A	brain
37	chr9:118705600-118708000	Enhancers	Placenta	Placenta
38	chr9:118705800-118706000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:118705800-118706800	Weak transcription	Right Atrium	heart
40	chr9:118705800-118707600	Enhancers	Fetal Stomach	stomach

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