Variant report

Variant	rs1076022
Chromosome Location	chr15:31556741-31556742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12101670	0.84[AMR][1000 genomes]
rs12437996	0.84[AMR][1000 genomes]
rs1972825	0.84[AMR][1000 genomes]
rs28631253	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1076022	RP11-932O9.9	cis	Esophagus Muscularis	GTEx
rs1076022	RP11-932O9.7	cis	Heart Left Ventricle	GTEx

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31550600-31567600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:31552200-31558800	Enhancers	Primary T cells from cord blood	blood
3	chr15:31553200-31561800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:31553400-31557600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:31553400-31559000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:31553400-31561400	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:31553400-31563600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:31553600-31557600	Enhancers	Fetal Brain Male	brain
9	chr15:31553600-31558800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:31553600-31560000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:31553600-31560800	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:31553600-31560800	Enhancers	Brain Hippocampus Middle	brain
13	chr15:31553600-31561400	Enhancers	Fetal Muscle Leg	muscle
14	chr15:31553800-31558000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:31553800-31558200	Enhancers	Esophagus	oesophagus
16	chr15:31554400-31561400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:31554600-31557000	Enhancers	HepG2	liver
18	chr15:31554800-31556800	Enhancers	Fetal Brain Female	brain
19	chr15:31554800-31558600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr15:31554800-31560400	Enhancers	Liver	Liver
21	chr15:31554800-31561000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr15:31555000-31557400	Enhancers	Colonic Mucosa	Colon
23	chr15:31555000-31563600	Enhancers	Adipose Nuclei	Adipose
24	chr15:31555000-31565000	Enhancers	Fetal Heart	heart
25	chr15:31555200-31556800	Flanking Active TSS	GM12878-XiMat	blood
26	chr15:31555200-31556800	Enhancers	HMEC	breast
27	chr15:31555200-31558400	Enhancers	Lung	lung
28	chr15:31555200-31558800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr15:31555200-31559000	Enhancers	Fetal Intestine Large	intestine
30	chr15:31555200-31559400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:31555200-31561000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:31555200-31561000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:31555400-31556800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:31555400-31556800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:31555400-31556800	Enhancers	Psoas Muscle	Psoas
36	chr15:31555400-31556800	Enhancers	Hela-S3	cervix
37	chr15:31555400-31558200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:31555400-31559400	Enhancers	Brain Anterior Caudate	brain
39	chr15:31555400-31559600	Enhancers	Brain Cingulate Gyrus	brain
40	chr15:31555400-31560800	Enhancers	Stomach Mucosa	stomach
41	chr15:31555400-31563400	Enhancers	Fetal Intestine Small	intestine
42	chr15:31555600-31556800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr15:31555600-31556800	Enhancers	Brain Angular Gyrus	brain
44	chr15:31555600-31557000	Enhancers	Dnd41	blood
45	chr15:31555600-31558000	Enhancers	Primary B cells from cord blood	blood
46	chr15:31555600-31561600	Enhancers	HSMMtube	muscle
47	chr15:31555800-31556800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:31555800-31556800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:31555800-31556800	Enhancers	Right Atrium	heart
50	chr15:31555800-31557000	Bivalent Enhancer	Fetal Stomach	stomach

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