Variant report

Variant	rs28631253
Chromosome Location	chr15:31509171-31509172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31507074..31509248-chr15:31619187..31621529,2	MCF-7	breast:
2	chr15:31507734..31509504-chr15:31521434..31524217,2	MCF-7	breast:
3	chr1:153507668..153508950-chr15:31508416..31509240,3	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000259772	Chromatin interaction
ENSG00000197956	Chromatin interaction
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10438322	0.97[ASN][1000 genomes]
rs1076022	0.84[AMR][1000 genomes]
rs12101670	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437996	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439686	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1370062	0.97[ASN][1000 genomes]
rs1972825	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28451043	0.88[AMR][1000 genomes]
rs28669757	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3743235	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493531	0.97[ASN][1000 genomes]
rs7162278	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162751	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs754611	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944280	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
12	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	esv3389877	chr15:31506685-31509233	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31506600-31509400	Enhancers	Fetal Heart	heart
2	chr15:31506800-31509200	Enhancers	Fetal Brain Male	brain
3	chr15:31507400-31509200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr15:31507600-31509200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr15:31507600-31509400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:31507800-31509200	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:31507800-31509600	Enhancers	Primary T cells from cord blood	blood
8	chr15:31508200-31509200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:31508200-31509400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:31508400-31509200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:31508400-31509200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:31508400-31509200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:31508400-31509200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:31508400-31509200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
15	chr15:31508400-31509400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:31508400-31509400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr15:31508400-31509400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:31508400-31509600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:31508400-31514600	Weak transcription	Small Intestine	intestine
20	chr15:31508400-31516000	Weak transcription	Aorta	Aorta
21	chr15:31508600-31509200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:31508600-31509200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:31508600-31509200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr15:31508600-31509200	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr15:31508600-31509200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr15:31508600-31509200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:31508600-31509200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:31508600-31509200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:31508600-31509200	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr15:31508600-31509200	Flanking Active TSS	Liver	Liver
31	chr15:31508600-31509200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr15:31508600-31509200	Flanking Active TSS	Fetal Brain Female	brain
33	chr15:31508600-31509200	Flanking Active TSS	Placenta	Placenta
34	chr15:31508600-31509200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr15:31508600-31509200	Flanking Active TSS	Stomach Mucosa	stomach
36	chr15:31508600-31509200	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr15:31508600-31509200	Flanking Active TSS	NHEK	skin
38	chr15:31508600-31509400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
39	chr15:31508600-31509400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr15:31508600-31509400	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr15:31508600-31509400	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr15:31508600-31509400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:31508600-31509600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr15:31508600-31509600	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr15:31508600-31509600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr15:31508800-31509200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:31508800-31509200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr15:31508800-31509200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr15:31508800-31509200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
50	chr15:31508800-31509200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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