Variant report

Variant	rs28451043
Chromosome Location	chr15:31587562-31587563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31586050..31587803-chr15:31590575..31592506,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12101670	0.88[AMR][1000 genomes]
rs12323980	0.89[ASN][1000 genomes]
rs12437996	0.88[AMR][1000 genomes]
rs12439686	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1972825	0.88[AMR][1000 genomes]
rs28631253	0.88[AMR][1000 genomes]
rs3743235	0.81[AMR][1000 genomes]
rs73381204	0.89[ASN][1000 genomes]
rs9944280	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31577600-31589000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:31583800-31590400	Enhancers	Brain Substantia Nigra	brain
3	chr15:31584000-31588400	Enhancers	HepG2	liver
4	chr15:31584600-31587800	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:31584600-31591200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:31584800-31588000	Weak transcription	Pancreas	Pancrea
7	chr15:31585000-31589000	Weak transcription	Fetal Heart	heart
8	chr15:31585000-31589000	Weak transcription	Thymus	Thymus
9	chr15:31585200-31587800	Weak transcription	Hela-S3	cervix
10	chr15:31585200-31589000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:31585400-31587800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:31585400-31588000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:31585400-31588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:31585400-31588400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:31585400-31588400	Enhancers	Brain Hippocampus Middle	brain
16	chr15:31585400-31589000	Weak transcription	Left Ventricle	heart
17	chr15:31585600-31587800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:31585600-31588000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:31586000-31591200	Enhancers	Liver	Liver
20	chr15:31586200-31588000	Enhancers	Brain Angular Gyrus	brain
21	chr15:31586200-31588400	Enhancers	A549	lung
22	chr15:31586200-31589200	Weak transcription	Gastric	stomach
23	chr15:31586400-31588200	Enhancers	Stomach Mucosa	stomach
24	chr15:31586800-31589000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:31586800-31591200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:31587000-31588000	Weak transcription	Lung	lung
27	chr15:31587200-31587600	Weak transcription	Brain Anterior Caudate	brain
28	chr15:31587200-31587800	Enhancers	Brain Germinal Matrix	brain
29	chr15:31587200-31588000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:31587200-31588000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:31587200-31588600	Weak transcription	Placenta	Placenta
32	chr15:31587200-31595000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr15:31587400-31588600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:31587400-31589000	Weak transcription	Fetal Thymus	thymus
35	chr15:31587400-31594400	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links