Variant report

Variant	rs754611
Chromosome Location	chr15:31518211-31518212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10438322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10519726	1.00[JPT][hapmap]
rs12101670	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439686	0.86[ASN][1000 genomes]
rs1370062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1972825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28631253	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28669757	1.00[ASN][1000 genomes]
rs3743235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4304986	0.89[AFR][1000 genomes]
rs4779845	0.92[AFR][1000 genomes]
rs6493530	0.88[AFR][1000 genomes]
rs6493531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493532	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7162278	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs755563	0.85[AFR][1000 genomes]
rs9944280	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv977067	chr15:31509197-31523063	Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31509600-31520600	Weak transcription	HepG2	liver
2	chr15:31510800-31520600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:31514600-31521400	Weak transcription	A549	lung
4	chr15:31515000-31521200	Weak transcription	Hela-S3	cervix
5	chr15:31515600-31519800	Weak transcription	Gastric	stomach
6	chr15:31515600-31520000	Weak transcription	Thymus	Thymus
7	chr15:31515800-31521200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:31516200-31522000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:31516400-31518400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr15:31516600-31519600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:31516600-31520600	Weak transcription	Colonic Mucosa	Colon
12	chr15:31516600-31520600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:31516800-31519600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:31516800-31519800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:31516800-31520600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:31516800-31521400	Weak transcription	Pancreas	Pancrea
17	chr15:31516800-31523000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:31516800-31525400	Weak transcription	Right Ventricle	heart
19	chr15:31517000-31519000	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr15:31517000-31521200	Weak transcription	Esophagus	oesophagus
21	chr15:31517000-31521200	Weak transcription	Spleen	Spleen
22	chr15:31517200-31521400	Weak transcription	Fetal Heart	heart
23	chr15:31517400-31519600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:31517400-31520000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:31517400-31520000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr15:31517600-31518400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:31517600-31518600	Genic enhancers	Primary B cells from cord blood	blood
28	chr15:31517600-31519000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
29	chr15:31517800-31520000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:31517800-31521400	Weak transcription	Lung	lung
31	chr15:31518000-31518800	ZNF genes & repeats	Fetal Thymus	thymus
32	chr15:31518000-31521200	Weak transcription	Left Ventricle	heart
33	chr15:31518200-31519400	Enhancers	Stomach Mucosa	stomach
34	chr15:31518200-31521200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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