Variant report

Variant	rs10519726
Chromosome Location	chr15:31321875-31321876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10163148	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs11070678	0.83[CHB][hapmap]
rs1133642	0.82[CHB][hapmap]
rs12437677	0.89[ASN][1000 genomes]
rs12441456	0.91[ASN][1000 genomes]
rs12442021	0.85[ASN][1000 genomes]
rs12442333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs12442823	0.89[ASN][1000 genomes]
rs1474381	0.83[CHB][hapmap]
rs1474382	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs16956341	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16956362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16956366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs16956422	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs16956460	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17815804	1.00[CHD][hapmap]
rs2042613	0.82[CHD][hapmap]
rs2113945	0.83[CHB][hapmap];0.94[CHD][hapmap]
rs2272218	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2272219	0.83[CHB][hapmap]
rs2293319	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs2293320	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs28487996	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28693590	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs2949575	0.83[CHB][hapmap]
rs2949576	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2949578	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2955787	0.83[CHB][hapmap]
rs2955791	0.83[CHB][hapmap]
rs2959049	0.83[CHB][hapmap]
rs36042462	0.91[ASN][1000 genomes]
rs3743231	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs3743232	0.89[ASN][1000 genomes]
rs3743237	1.00[YRI][hapmap]
rs3784588	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4779796	0.83[CHB][hapmap]
rs4779797	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs6493358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7161812	0.82[CHB][hapmap]
rs7164939	1.00[CHB][hapmap]
rs7169064	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs7175354	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7175951	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs7176351	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs7178375	0.83[CHB][hapmap]
rs7178533	0.83[CHB][hapmap]
rs73368444	0.91[ASN][1000 genomes]
rs8041717	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs871312	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs872843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs964925	0.91[CHB][hapmap]
rs9806159	0.83[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
7	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
10	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
13	nsv903835	chr15:31312743-31384797	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10519726	FOXK2	trans	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31316400-31324800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:31316800-31330000	Weak transcription	Pancreas	Pancrea
3	chr15:31317400-31323400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr15:31317400-31323800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:31317400-31326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:31317400-31328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:31317400-31334200	Weak transcription	Gastric	stomach
8	chr15:31317600-31325200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:31317800-31323800	Weak transcription	NH-A	brain
10	chr15:31317800-31323800	Weak transcription	Osteobl	bone
11	chr15:31317800-31324600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:31318000-31325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:31318600-31323800	Weak transcription	Placenta	Placenta
14	chr15:31319600-31322600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:31321000-31323800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:31321200-31323200	Weak transcription	HUVEC	blood vessel

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