Variant report

Variant	rs16956362
Chromosome Location	chr15:31198972-31198973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31198827..31201820-chr15:31205721..31207628,2	K562	blood:
2	chr15:31198392..31199142-chr15:31226081..31226727,2	K562	blood:
3	chr15:31198133..31200018-chr15:31290120..31292612,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10163148	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs10519726	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11070678	0.83[CHB][hapmap]
rs1133642	0.82[CHB][hapmap]
rs11852466	1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs12439079	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440215	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12441602	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12442333	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12442357	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12443238	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12443338	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1474381	0.83[CHB][hapmap]
rs1474382	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs16956332	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16956341	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16956366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16956414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs16956422	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs17815804	1.00[CHD][hapmap]
rs2042613	0.83[CHD][hapmap]
rs2113945	0.83[CHB][hapmap];0.94[CHD][hapmap]
rs2272218	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2272219	0.83[CHB][hapmap]
rs2293319	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs2293320	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs28693590	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs2949575	0.83[CHB][hapmap]
rs2949576	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2949578	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs2955787	0.83[CHB][hapmap]
rs2955791	0.83[CHB][hapmap]
rs2959049	0.83[CHB][hapmap]
rs3743231	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs3784588	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4506857	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4779796	0.83[CHB][hapmap]
rs4779797	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs6493358	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7161812	0.82[CHB][hapmap]
rs7164939	1.00[CHB][hapmap]
rs7169064	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs7175354	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7175951	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs7176351	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs7178375	0.83[CHB][hapmap]
rs7178533	0.83[CHB][hapmap]
rs8041717	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs871312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs872843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964925	0.91[CHB][hapmap]
rs9806159	0.83[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv533434	chr15:30938215-31244225	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
10	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31196600-31200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:31196600-31201400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:31196600-31201400	Weak transcription	Small Intestine	intestine
4	chr15:31196600-31201600	Weak transcription	Gastric	stomach
5	chr15:31196600-31210800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:31196800-31199200	Enhancers	Brain Hippocampus Middle	brain
7	chr15:31196800-31199400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:31196800-31199800	Weak transcription	Fetal Thymus	thymus
9	chr15:31196800-31200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:31196800-31200200	Weak transcription	HSMM	muscle
11	chr15:31196800-31200400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:31196800-31200400	Weak transcription	Placenta	Placenta
13	chr15:31196800-31201000	Weak transcription	Ovary	ovary
14	chr15:31196800-31201200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:31196800-31201200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:31196800-31201200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:31196800-31201400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:31196800-31201400	Weak transcription	Lung	lung
19	chr15:31196800-31201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:31196800-31201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:31196800-31201600	Weak transcription	Aorta	Aorta
22	chr15:31196800-31201600	Weak transcription	Fetal Intestine Small	intestine
23	chr15:31196800-31201600	Weak transcription	Right Ventricle	heart
24	chr15:31196800-31202800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:31196800-31210400	Weak transcription	HSMMtube	muscle
26	chr15:31196800-31213000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:31196800-31215000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:31197000-31199200	Enhancers	Fetal Heart	heart
29	chr15:31197000-31199200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr15:31197000-31199400	Enhancers	Liver	Liver
31	chr15:31197000-31199400	Enhancers	HepG2	liver
32	chr15:31197000-31199800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:31197000-31200200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:31197000-31200400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:31197000-31200400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:31197000-31200800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:31197000-31200800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:31197000-31200800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:31197000-31201000	Weak transcription	Osteobl	bone
40	chr15:31197000-31201200	Weak transcription	Hela-S3	cervix
41	chr15:31197000-31201200	Weak transcription	NHDF-Ad	bronchial
42	chr15:31197000-31201400	Weak transcription	NHLF	lung
43	chr15:31197000-31201600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:31197000-31201600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr15:31197000-31201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:31197000-31201800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:31197000-31206200	Weak transcription	NH-A	brain
48	chr15:31197000-31210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:31197000-31213400	Weak transcription	Stomach Mucosa	stomach
50	chr15:31197000-31216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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