Variant report

Variant	rs16956366
Chromosome Location	chr15:31201568-31201569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31198827..31201820-chr15:31205721..31207628,2	K562	blood:
2	chr15:31200708..31203485-chr15:31204124..31206171,2	MCF-7	breast:
3	chr15:31200156..31201830-chr15:31207091..31209747,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10163148	0.83[CHB][hapmap]
rs10519726	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11070678	0.83[CHB][hapmap]
rs1133642	0.82[CHB][hapmap]
rs11852466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12439079	0.96[ASN][1000 genomes]
rs12440215	0.83[ASN][1000 genomes]
rs12441602	0.85[ASN][1000 genomes]
rs12442333	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12442357	0.87[ASN][1000 genomes]
rs12443238	0.91[ASN][1000 genomes]
rs12443338	0.87[ASN][1000 genomes]
rs1474381	0.83[CHB][hapmap]
rs1474382	0.83[CHB][hapmap]
rs16956332	0.87[ASN][1000 genomes]
rs16956341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16956362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16956414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2113945	0.83[CHB][hapmap]
rs2272218	0.83[CHB][hapmap]
rs2272219	0.83[CHB][hapmap]
rs2293319	0.83[CHB][hapmap]
rs2293320	0.83[CHB][hapmap]
rs28693590	0.83[CHB][hapmap]
rs2949575	0.83[CHB][hapmap]
rs2949576	0.83[CHB][hapmap]
rs2949578	0.83[CHB][hapmap]
rs2955787	0.83[CHB][hapmap]
rs2955791	0.83[CHB][hapmap]
rs2959049	0.83[CHB][hapmap]
rs3743231	0.83[CHB][hapmap]
rs3784588	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4506857	0.87[ASN][1000 genomes]
rs4779796	0.83[CHB][hapmap]
rs4779797	0.83[CHB][hapmap]
rs6493358	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7161812	0.82[CHB][hapmap]
rs7164939	1.00[CHB][hapmap]
rs7169064	0.83[CHB][hapmap]
rs7175354	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7175951	0.83[CHB][hapmap]
rs7176351	0.83[CHB][hapmap]
rs7178375	0.83[CHB][hapmap]
rs7178533	0.83[CHB][hapmap]
rs8041717	0.83[CHB][hapmap]
rs871312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs872843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964925	0.91[CHB][hapmap]
rs9806159	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv533434	chr15:30938215-31244225	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
10	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31196600-31201600	Weak transcription	Gastric	stomach
2	chr15:31196600-31210800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:31196800-31201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:31196800-31201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:31196800-31201600	Weak transcription	Aorta	Aorta
6	chr15:31196800-31201600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:31196800-31201600	Weak transcription	Right Ventricle	heart
8	chr15:31196800-31202800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:31196800-31210400	Weak transcription	HSMMtube	muscle
10	chr15:31196800-31213000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:31196800-31215000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:31197000-31201600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:31197000-31201600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:31197000-31201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:31197000-31201800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:31197000-31206200	Weak transcription	NH-A	brain
17	chr15:31197000-31210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:31197000-31213400	Weak transcription	Stomach Mucosa	stomach
19	chr15:31197000-31216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:31197200-31202400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:31197200-31204600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:31197200-31214000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:31197400-31201600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:31197400-31207200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:31197400-31207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:31197400-31208400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:31197400-31210600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:31197400-31211200	Strong transcription	A549	lung
29	chr15:31197400-31215000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:31197600-31201600	Weak transcription	GM12878-XiMat	blood
31	chr15:31197600-31201800	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:31198200-31202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:31198200-31210400	Weak transcription	K562	blood
34	chr15:31198200-31224000	Strong transcription	Dnd41	blood
35	chr15:31198400-31204600	Weak transcription	Fetal Brain Male	brain
36	chr15:31198400-31213000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:31198800-31201600	Weak transcription	Pancreas	Pancrea
38	chr15:31198800-31201800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:31198800-31203000	Weak transcription	Fetal Kidney	kidney
40	chr15:31198800-31205400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:31199200-31201600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:31199200-31201600	Weak transcription	Esophagus	oesophagus
43	chr15:31199200-31201600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:31199200-31208600	Weak transcription	Fetal Heart	heart
45	chr15:31199800-31203000	Strong transcription	Fetal Thymus	thymus
46	chr15:31199800-31213400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:31200000-31211600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:31200000-31213200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:31200200-31202400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:31200200-31203600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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