Variant report

Variant	rs872843
Chromosome Location	chr15:31248756-31248757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:31248478-31248800	K562	blood:	n/a	chr15:31248619-31248633 chr15:31248624-31248632
2	CEBPB	chr15:31248475-31248824	A549	lung:	n/a	n/a
3	CEBPB	chr15:31248503-31248768	HepG2	liver:	n/a	n/a
4	USF2	chr15:31248466-31248835	Hela-S3	cervix:	n/a	chr15:31248654-31248665
5	SMC3	chr15:31248532-31248806	Hela-S3	cervix:	n/a	n/a
6	JUND	chr15:31248480-31248789	HepG2	liver:	n/a	n/a
7	CEBPB	chr15:31248422-31248794	IMR90	lung:	n/a	n/a
8	JUND	chr15:31248442-31248805	K562	blood:	n/a	n/a
9	CEBPB	chr15:31248368-31248833	Hela-S3	cervix:	n/a	n/a
10	USF1	chr15:31248513-31248783	SK-N-SH_RA	brain:	n/a	n/a
11	RCOR1	chr15:31248434-31248809	Hela-S3	cervix:	n/a	n/a
12	GATA3	chr15:31248223-31248960	SK-N-SH	brain:	n/a	chr15:31248264-31248285 chr15:31248271-31248278 chr15:31248269-31248278 chr15:31248269-31248279 chr15:31248266-31248282 chr15:31248271-31248278 chr15:31248271-31248278
13	RCOR1	chr15:31248590-31248886	K562	blood:	n/a	n/a
14	GATA3	chr15:31248312-31248880	SK-N-SH	brain:	n/a	n/a
15	CEBPB	chr15:31248421-31248798	A549	lung:	n/a	n/a
16	EP300	chr15:31248493-31248775	Hela-S3	cervix:	n/a	chr15:31248619-31248633 chr15:31248624-31248632
17	MAX	chr15:31248508-31248826	NB4	blood:	n/a	chr15:31248622-31248631 chr15:31248654-31248664

Variant related genes	Relation type
RNU6-466P	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10163148	0.83[CHB][hapmap]
rs10519726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11070678	0.83[CHB][hapmap]
rs1133642	0.82[CHB][hapmap]
rs11852466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12437677	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12441456	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12442021	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12442823	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1474381	0.83[CHB][hapmap]
rs1474382	0.83[CHB][hapmap]
rs16956341	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956362	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16956460	0.89[ASN][1000 genomes]
rs2113945	0.83[CHB][hapmap]
rs2272218	0.83[CHB][hapmap]
rs2272219	0.83[CHB][hapmap]
rs2293319	0.83[CHB][hapmap]
rs2293320	0.83[CHB][hapmap]
rs28487996	0.91[ASN][1000 genomes]
rs28693590	0.83[CHB][hapmap]
rs2949575	0.83[CHB][hapmap]
rs2949576	0.83[CHB][hapmap]
rs2949578	0.83[CHB][hapmap]
rs2955787	0.83[CHB][hapmap]
rs2955791	0.83[CHB][hapmap]
rs2959049	0.83[CHB][hapmap]
rs36042462	0.93[ASN][1000 genomes]
rs3743231	0.83[CHB][hapmap]
rs3743232	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4779796	0.83[CHB][hapmap]
rs4779797	0.83[CHB][hapmap]
rs6493358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7161812	0.82[CHB][hapmap]
rs7164939	1.00[CHB][hapmap]
rs7169064	0.83[CHB][hapmap]
rs7175354	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7175951	0.83[CHB][hapmap]
rs7176351	0.83[CHB][hapmap]
rs7178375	0.83[CHB][hapmap]
rs7178533	0.83[CHB][hapmap]
rs73368444	0.93[ASN][1000 genomes]
rs8041717	0.83[CHB][hapmap]
rs871312	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs964925	0.91[CHB][hapmap]
rs9806159	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
8	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31200600-31254800	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:31225400-31255800	Strong transcription	Fetal Intestine Large	intestine
3	chr15:31225600-31253800	Strong transcription	Dnd41	blood
4	chr15:31225800-31256000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:31226000-31255800	Strong transcription	Fetal Stomach	stomach
6	chr15:31226000-31258800	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:31226200-31269200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:31226400-31260800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:31226600-31254400	Strong transcription	Fetal Thymus	thymus
10	chr15:31226600-31255200	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:31227000-31269600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:31227200-31255800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:31227200-31258800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:31228400-31253600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:31228400-31254400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr15:31228400-31254600	Strong transcription	Thymus	Thymus
17	chr15:31228600-31253200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:31228600-31258800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr15:31229000-31254800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:31229200-31261000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:31230400-31258800	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:31233400-31269200	Strong transcription	Liver	Liver
23	chr15:31236200-31250000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:31236600-31255000	Strong transcription	Rectal Smooth Muscle	rectum
25	chr15:31237200-31269600	Strong transcription	Primary B cells from cord blood	blood
26	chr15:31238200-31254600	Strong transcription	Fetal Lung	lung
27	chr15:31238600-31255200	Strong transcription	Fetal Kidney	kidney
28	chr15:31240400-31255000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:31241400-31254600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:31242000-31282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:31242200-31251600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:31242200-31253400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:31242200-31254600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:31242400-31255800	Strong transcription	Fetal Intestine Small	intestine
35	chr15:31242600-31253200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:31242600-31253800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:31243000-31254400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr15:31243200-31254800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:31243200-31267600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:31243400-31253000	Weak transcription	Fetal Brain Male	brain
41	chr15:31243600-31248800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
42	chr15:31243600-31249000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:31244000-31252800	Strong transcription	Colon Smooth Muscle	Colon
44	chr15:31244000-31253600	Strong transcription	HepG2	liver
45	chr15:31245000-31276400	Weak transcription	Brain Germinal Matrix	brain
46	chr15:31245400-31248800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
47	chr15:31245600-31250600	Weak transcription	Small Intestine	intestine
48	chr15:31245800-31250400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:31246000-31248800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:31246000-31249000	Genic enhancers	Placenta	Placenta

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