Variant report

Variant	rs10761187
Chromosome Location	chr9:95766670-95766671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95719185..95719752-chr9:95765738..95766670,2	MCF-7	breast:
2	chr9:95739140..95740868-chr9:95765712..95767872,2	MCF-7	breast:
3	chr9:95764914..95766688-chr9:95768707..95770560,2	MCF-7	breast:
4	chr9:95761527..95763076-chr9:95764735..95767676,2	K562	blood:
5	chr9:95764926..95767414-chr9:95782606..95784200,2	MCF-7	breast:
6	chr9:95764397..95768278-chr9:95771729..95773311,3	K562	blood:
7	chr9:95750713..95751415-chr9:95766501..95767049,2	MCF-7	breast:
8	chr9:95765841..95768225-chr9:95860926..95862448,2	MCF-7	breast:
9	chr9:95766003..95766670-chr9:96067179..96067717,2	MCF-7	breast:
10	chr9:95766059..95768538-chr9:95781716..95783313,2	MCF-7	breast:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10821053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992572	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13300085	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4744164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479444	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95761600-95785800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:95761600-95785800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:95762000-95767800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95762000-95786400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr9:95762200-95767400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr9:95762600-95790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:95763000-95767200	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr9:95763000-95773400	Strong transcription	Primary B cells from cord blood	blood
9	chr9:95763600-95787200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:95763800-95766800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:95763800-95767400	Genic enhancers	Primary T cells from cord blood	blood
12	chr9:95763800-95789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:95764000-95767000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:95764000-95773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:95764000-95777000	Strong transcription	Dnd41	blood
16	chr9:95764400-95768200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr9:95764400-95774000	Strong transcription	Thymus	Thymus
18	chr9:95764600-95766800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:95764600-95767200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr9:95765000-95767200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:95765200-95767000	Genic enhancers	Fetal Thymus	thymus
22	chr9:95765800-95767200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:95765800-95768400	Strong transcription	Brain Germinal Matrix	brain
24	chr9:95766000-95766800	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr9:95766000-95766800	Flanking Active TSS	K562	blood
26	chr9:95766000-95767000	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:95766000-95767200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:95766000-95771200	Strong transcription	GM12878-XiMat	blood
29	chr9:95766000-95772200	Strong transcription	Primary hematopoietic stem cells	blood
30	chr9:95766200-95766800	Flanking Active TSS	Stomach Mucosa	stomach
31	chr9:95766200-95767000	Active TSS	Hela-S3	cervix
32	chr9:95766200-95767200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:95766200-95768000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:95766200-95768400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr9:95766400-95766800	Enhancers	Fetal Muscle Leg	muscle
36	chr9:95766400-95766800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr9:95766400-95767200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:95766400-95767400	Strong transcription	Fetal Brain Female	brain
39	chr9:95766400-95771800	Weak transcription	Esophagus	oesophagus
40	chr9:95766400-95785600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr9:95766600-95766800	Enhancers	Adipose Nuclei	Adipose
42	chr9:95766600-95766800	Enhancers	Liver	Liver
43	chr9:95766600-95766800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr9:95766600-95766800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr9:95766600-95766800	Flanking Active TSS	A549	lung
46	chr9:95766600-95767000	Enhancers	Ovary	ovary
47	chr9:95766600-95767200	Genic enhancers	Pancreas	Pancrea
48	chr9:95766600-95767200	Genic enhancers	Spleen	Spleen
49	chr9:95766600-95767400	Strong transcription	Lung	lung
50	chr9:95766600-95767400	Enhancers	HepG2	liver

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