Variant report

Variant	rs13300085
Chromosome Location	chr9:95768080-95768081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95762280..95764088-chr9:95766810..95768314,2	MCF-7	breast:
2	chr9:95764397..95768278-chr9:95771729..95773311,3	K562	blood:
3	chr9:95765841..95768225-chr9:95860926..95862448,2	MCF-7	breast:
4	chr9:95766059..95768538-chr9:95781716..95783313,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10739940	0.95[JPT][hapmap]
rs10761187	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10761189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821053	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10992564	0.95[JPT][hapmap]
rs10992568	0.91[YRI][hapmap]
rs10992572	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12685670	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744163	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744164	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6479444	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6479445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030160	0.95[JPT][hapmap]
rs7869421	0.95[JPT][hapmap]
rs9942903	0.95[JPT][hapmap]
rs9942965	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95761600-95785800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:95761600-95785800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:95762000-95786400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr9:95762600-95790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:95763000-95773400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:95763600-95787200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:95763800-95789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95764000-95773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:95764000-95777000	Strong transcription	Dnd41	blood
10	chr9:95764400-95768200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:95764400-95774000	Strong transcription	Thymus	Thymus
12	chr9:95765800-95768400	Strong transcription	Brain Germinal Matrix	brain
13	chr9:95766000-95771200	Strong transcription	GM12878-XiMat	blood
14	chr9:95766000-95772200	Strong transcription	Primary hematopoietic stem cells	blood
15	chr9:95766200-95768400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr9:95766400-95771800	Weak transcription	Esophagus	oesophagus
17	chr9:95766400-95785600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr9:95766600-95769800	Weak transcription	Left Ventricle	heart
19	chr9:95766600-95770000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:95766600-95772600	Weak transcription	Fetal Stomach	stomach
21	chr9:95766600-95773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:95766600-95773800	Strong transcription	Fetal Intestine Large	intestine
23	chr9:95766600-95776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:95766600-95778000	Weak transcription	Gastric	stomach
25	chr9:95766600-95780200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:95766600-95783400	Weak transcription	Placenta	Placenta
27	chr9:95766600-95790400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:95766600-95790800	Weak transcription	Right Ventricle	heart
29	chr9:95766600-95791000	Weak transcription	Colonic Mucosa	Colon
30	chr9:95766600-95791000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:95766600-95794000	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:95766800-95769600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:95766800-95770400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr9:95766800-95770600	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:95766800-95771400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:95766800-95772800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:95766800-95782400	Weak transcription	Liver	Liver
38	chr9:95766800-95786400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:95767000-95771600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:95767000-95781800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:95767000-95787200	Strong transcription	Fetal Thymus	thymus
42	chr9:95767200-95768200	Weak transcription	Pancreas	Pancrea
43	chr9:95767200-95769000	Strong transcription	Spleen	Spleen
44	chr9:95767200-95769800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:95767200-95769800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr9:95767200-95770000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr9:95767200-95772000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr9:95767200-95772000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr9:95767200-95776600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:95767200-95781600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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