Variant report

Variant	rs4744163
Chromosome Location	chr9:95762127-95762128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95761527..95763076-chr9:95764735..95767676,2	K562	blood:
2	chr9:95761019..95763076-chr9:95764384..95766235,2	K562	blood:
3	chr9:95751115..95753216-chr9:95762074..95764043,2	MCF-7	breast:
4	chr9:95762106..95765077-chr9:95786867..95789885,3	MCF-7	breast:
5	chr9:95749653..95752531-chr9:95761934..95764790,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10761189	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13300085	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479445	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95752600-95766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:95755000-95766200	Weak transcription	Lung	lung
3	chr9:95755200-95764800	Weak transcription	Spleen	Spleen
4	chr9:95755200-95765800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:95755400-95766000	Weak transcription	Pancreas	Pancrea
6	chr9:95755600-95762200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:95755600-95762600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:95755600-95764000	Weak transcription	Dnd41	blood
9	chr9:95755800-95765800	Weak transcription	GM12878-XiMat	blood
10	chr9:95756000-95762800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:95760800-95762200	Strong transcription	Primary T cells from cord blood	blood
12	chr9:95760800-95762200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr9:95760800-95762200	ZNF genes & repeats	Thymus	Thymus
14	chr9:95760800-95762600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:95760800-95762800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr9:95761200-95765800	Weak transcription	Colonic Mucosa	Colon
17	chr9:95761400-95762200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:95761400-95762200	ZNF genes & repeats	Fetal Thymus	thymus
19	chr9:95761400-95762400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95761400-95765200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:95761600-95762200	Genic enhancers	Primary T cells fromperipheralblood	blood
22	chr9:95761600-95762200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:95761600-95762200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:95761600-95762200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:95761600-95762600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr9:95761600-95785800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:95761600-95785800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr9:95761800-95762200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:95761800-95762400	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:95761800-95764600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:95762000-95762200	Weak transcription	Primary B cells from cord blood	blood
32	chr9:95762000-95762800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:95762000-95763200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr9:95762000-95767800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr9:95762000-95786400	Strong transcription	Primary monocytes fromperipheralblood	blood

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