Variant report

Variant	rs10992568
Chromosome Location	chr9:95753319-95753320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95750295..95753959-chr9:95856034..95859427,4	MCF-7	breast:
2	chr9:95735773..95738938-chr9:95746079..95753670,13	MCF-7	breast:
3	chr9:95751099..95753826-chr9:95754095..95756433,2	MCF-7	breast:
4	chr9:95744507..95747360-chr9:95750258..95753715,3	MCF-7	breast:
5	chr9:95746898..95754225-chr9:95890814..95897960,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165233	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12336880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683998	0.88[ASN][1000 genomes]
rs12684870	0.90[ASN][1000 genomes]
rs13300085	0.91[YRI][hapmap]
rs4744164	0.91[YRI][hapmap]
rs58450751	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95740000-95754800	Weak transcription	Gastric	stomach
2	chr9:95740000-95754800	Weak transcription	Pancreas	Pancrea
3	chr9:95747800-95754600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:95748200-95756000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:95749200-95755600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:95750200-95754800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:95750600-95754400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:95750600-95754800	Weak transcription	Spleen	Spleen
9	chr9:95750600-95755000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:95750800-95754600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:95750800-95754600	Weak transcription	GM12878-XiMat	blood
12	chr9:95750800-95754800	Weak transcription	Lung	lung
13	chr9:95751200-95754600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:95751200-95755000	Weak transcription	Esophagus	oesophagus
15	chr9:95751400-95753400	Weak transcription	Primary B cells from cord blood	blood
16	chr9:95751400-95754200	Weak transcription	Dnd41	blood
17	chr9:95751400-95754400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:95751600-95753400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:95751600-95754600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:95751800-95754800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:95751800-95755600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:95752000-95754200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr9:95752200-95753800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr9:95752200-95754200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:95752400-95753400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr9:95752400-95754600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:95752400-95755400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:95752400-95755600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:95752600-95753800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:95752600-95754400	Enhancers	Primary T cells from cord blood	blood
31	chr9:95752600-95754600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr9:95752600-95754800	Weak transcription	Fetal Thymus	thymus
33	chr9:95752600-95755600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr9:95752600-95766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:95752800-95753600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr9:95752800-95754800	Weak transcription	Thymus	Thymus
37	chr9:95753000-95753600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:95753000-95753800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr9:95753000-95754200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:95753200-95754000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:95753200-95754200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:95753200-95754400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr9:95753200-95754400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:95753200-95755600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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