Variant report

Variant	rs10761196
Chromosome Location	chr9:95908826-95908827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10114849	0.92[ASN][1000 genomes]
rs10739943	0.92[ASN][1000 genomes]
rs1419232	0.92[ASN][1000 genomes]
rs1936400	0.96[ASN][1000 genomes]
rs2398824	0.96[ASN][1000 genomes]
rs2398826	0.92[ASN][1000 genomes]
rs4335184	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743893	0.94[ASN][1000 genomes]
rs4743895	0.96[ASN][1000 genomes]
rs4744179	0.95[ASN][1000 genomes]
rs4744180	0.95[ASN][1000 genomes]
rs6479455	0.92[ASN][1000 genomes]
rs7847349	0.92[ASN][1000 genomes]
rs7867718	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95899800-95922200	Weak transcription	Gastric	stomach
2	chr9:95904800-95911600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:95906800-95910000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:95907000-95909400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:95907000-95911000	Weak transcription	Aorta	Aorta
6	chr9:95907200-95909200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:95907200-95910000	Weak transcription	Psoas Muscle	Psoas
8	chr9:95907200-95913200	Weak transcription	HepG2	liver
9	chr9:95907200-95913400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:95907200-95918600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:95907200-95922200	Weak transcription	Pancreas	Pancrea
12	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
13	chr9:95907400-95911400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:95907400-95911400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr9:95908400-95909000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:95908400-95909200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr9:95908600-95909400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr9:95908600-95911400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:95908600-95918600	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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