Variant report

Variant	rs10114849
Chromosome Location	chr9:95894053-95894054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95763574..95766256-chr9:95893886..95895628,2	MCF-7	breast:
2	chr9:95881490..95886849-chr9:95891631..95895235,6	K562	blood:
3	chr9:95525332..95528852-chr9:95893539..95896445,3	MCF-7	breast:
4	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
5	chr9:95892565..95895144-chr9:96051454..96053767,2	MCF-7	breast:
6	chr9:95887494..95889402-chr9:95893235..95894836,2	K562	blood:
7	chr9:95893411..95895771-chr9:96236357..96238197,2	MCF-7	breast:
8	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:
9	chr9:95893768..95895658-chr9:95897377..95900133,3	K562	blood:
10	chr9:95871458..95873101-chr9:95893633..95895517,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10739943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761196	0.92[ASN][1000 genomes]
rs11793313	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1419232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936400	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2185974	0.82[EUR][1000 genomes]
rs2398824	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2398826	0.92[ASN][1000 genomes]
rs3750555	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3829123	0.82[EUR][1000 genomes]
rs4743893	0.94[ASN][1000 genomes]
rs4743895	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4744177	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4744179	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4744180	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6479455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479456	0.87[AMR][1000 genomes]
rs7847349	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871154	0.81[ASN][1000 genomes]
rs7875586	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv614879	chr9:95883363-95897564	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95870000-95895400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:95871000-95894200	Weak transcription	Dnd41	blood
3	chr9:95883000-95894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:95883000-95895000	Weak transcription	HSMMtube	muscle
5	chr9:95883000-95895000	Weak transcription	K562	blood
6	chr9:95885000-95895400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:95886800-95895400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr9:95887600-95894800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr9:95888200-95894600	Weak transcription	Osteobl	bone
10	chr9:95888200-95895000	Enhancers	Esophagus	oesophagus
11	chr9:95888400-95894200	Weak transcription	Hela-S3	cervix
12	chr9:95888400-95894800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr9:95888400-95895000	Enhancers	HUVEC	blood vessel
14	chr9:95888600-95894200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:95888600-95895000	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:95888600-95895200	Enhancers	Left Ventricle	heart
17	chr9:95888800-95895000	Enhancers	Lung	lung
18	chr9:95889200-95895400	Weak transcription	Thymus	Thymus
19	chr9:95889400-95894400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:95889400-95894600	Enhancers	Pancreas	Pancrea
21	chr9:95889400-95894800	Weak transcription	Fetal Brain Male	brain
22	chr9:95889400-95895000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr9:95889600-95894800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:95889600-95894800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:95889600-95895000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:95889600-95895200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:95889800-95894200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:95889800-95894600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:95889800-95895200	Weak transcription	Fetal Kidney	kidney
30	chr9:95890000-95894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:95890000-95895000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr9:95890000-95895000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:95890000-95895000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:95890000-95895000	Weak transcription	NH-A	brain
35	chr9:95890000-95895600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr9:95890400-95894400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:95890400-95894400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:95890400-95894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:95890400-95894600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr9:95890400-95894800	Enhancers	Right Atrium	heart
41	chr9:95890400-95896600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:95890600-95894400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
43	chr9:95890600-95894600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr9:95890600-95894800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:95890800-95896000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
46	chr9:95891000-95894200	Weak transcription	HMEC	breast
47	chr9:95891000-95894400	Enhancers	Liver	Liver
48	chr9:95891200-95894600	Enhancers	Brain Anterior Caudate	brain
49	chr9:95891200-95894600	Weak transcription	Fetal Brain Female	brain
50	chr9:95891200-95894600	Weak transcription	Fetal Heart	heart

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