Variant report

Variant	rs3829123
Chromosome Location	chr9:95885341-95885342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95881490..95886849-chr9:95891631..95895235,6	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10114849	0.82[EUR][1000 genomes]
rs10739943	0.82[EUR][1000 genomes]
rs1127851	0.95[ASN][1000 genomes]
rs11793313	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419232	0.82[EUR][1000 genomes]
rs2185974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275848	0.97[ASN][1000 genomes]
rs28722632	0.96[AFR][1000 genomes]
rs3750555	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793662	0.98[ASN][1000 genomes]
rs4744177	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479454	0.96[ASN][1000 genomes]
rs6479455	0.82[EUR][1000 genomes]
rs7847349	0.94[EUR][1000 genomes]
rs7867718	0.82[EUR][1000 genomes]
rs7875586	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv614879	chr9:95883363-95897564	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
2	chr9:95870000-95895400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95871000-95894200	Weak transcription	Dnd41	blood
4	chr9:95873400-95888800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:95873600-95886000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:95876600-95886000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:95877000-95889200	Weak transcription	Fetal Brain Female	brain
8	chr9:95877200-95888800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:95877400-95886000	Weak transcription	Brain Germinal Matrix	brain
10	chr9:95879000-95886000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95879200-95886000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:95879200-95886000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:95879200-95886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:95879200-95888600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:95879200-95889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:95879400-95886000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:95882400-95888200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:95882600-95887200	Weak transcription	Thymus	Thymus
19	chr9:95882600-95888600	Weak transcription	Fetal Lung	lung
20	chr9:95882600-95888600	Weak transcription	Right Atrium	heart
21	chr9:95882800-95885400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:95882800-95885800	Weak transcription	Brain Substantia Nigra	brain
23	chr9:95882800-95886000	Weak transcription	Fetal Thymus	thymus
24	chr9:95882800-95886200	Genic enhancers	Fetal Muscle Leg	muscle
25	chr9:95882800-95887000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:95882800-95889000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:95882800-95889200	Weak transcription	HSMM	muscle
28	chr9:95882800-95889200	Weak transcription	NH-A	brain
29	chr9:95883000-95886000	Weak transcription	Fetal Heart	heart
30	chr9:95883000-95886000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:95883000-95886000	Weak transcription	GM12878-XiMat	blood
32	chr9:95883000-95886400	Weak transcription	Osteobl	bone
33	chr9:95883000-95887400	Weak transcription	Stomach Mucosa	stomach
34	chr9:95883000-95887400	Weak transcription	Hela-S3	cervix
35	chr9:95883000-95887600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:95883000-95887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:95883000-95888000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:95883000-95888200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:95883000-95888200	Strong transcription	Fetal Intestine Large	intestine
40	chr9:95883000-95888400	Strong transcription	Fetal Intestine Small	intestine
41	chr9:95883000-95888400	Weak transcription	HUVEC	blood vessel
42	chr9:95883000-95889000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:95883000-95894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:95883000-95895000	Weak transcription	HSMMtube	muscle
45	chr9:95883000-95895000	Weak transcription	K562	blood
46	chr9:95883200-95885400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
47	chr9:95883200-95885800	Weak transcription	HMEC	breast
48	chr9:95883200-95886000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr9:95883200-95886000	Strong transcription	Colonic Mucosa	Colon
50	chr9:95883200-95886600	Genic enhancers	Placenta	Placenta

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