Variant report

Variant	rs10761334
Chromosome Location	chr9:97320726-97320727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10117554	0.80[AMR][1000 genomes]
rs10122208	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10123891	0.80[EUR][1000 genomes]
rs1048510	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761335	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761338	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761339	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821368	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11789810	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1568305	0.81[AMR][1000 genomes]
rs3802468	0.80[EUR][1000 genomes]
rs4314706	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4743959	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4744357	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62578748	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7035381	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039582	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868159	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97317200-97321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:97317200-97325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:97317200-97354000	Weak transcription	Gastric	stomach
4	chr9:97317600-97320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:97317600-97321000	Weak transcription	Liver	Liver
6	chr9:97317600-97325200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:97317600-97328600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:97317800-97325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:97318200-97324400	Weak transcription	A549	lung
10	chr9:97318200-97327200	Weak transcription	Hela-S3	cervix
11	chr9:97318200-97332000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:97318600-97325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:97318800-97321000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:97318800-97321200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:97318800-97321200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:97318800-97321200	Weak transcription	HepG2	liver
17	chr9:97318800-97322400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:97318800-97326200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:97318800-97326600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:97318800-97331600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:97319200-97321000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97319200-97321600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:97319200-97321800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:97319200-97331800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:97320200-97321000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:97320400-97325600	Weak transcription	Fetal Muscle Trunk	muscle

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