Variant report

Variant	rs10761366
Chromosome Location	chr9:97774879-97774880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97769222..97771704-chr9:97773500..97776242,3	K562	blood:
2	chr9:97766934..97769900-chr9:97774510..97776079,2	K562	blood:
3	chr9:97772446..97776004-chr9:97866953..97870204,3	MCF-7	breast:
4	chr9:97564695..97567248-chr9:97774621..97777227,2	MCF-7	breast:
5	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
6	chr9:97772268..97775206-chr9:97807423..97809466,2	K562	blood:
7	chr9:97773644..97776105-chr9:97889284..97892061,2	MCF-7	breast:
8	chr9:97774294..97776969-chr9:97847826..97850340,2	MCF-7	breast:
9	chr9:97773333..97774904-chr9:97810688..97812509,2	MCF-7	breast:
10	chr9:97773624..97778392-chr9:97779399..97783599,7	K562	blood:
11	chr9:97567267..97570161-chr9:97772794..97775728,2	MCF-7	breast:
12	chr9:97542800..97546553-chr9:97773474..97777107,5	MCF-7	breast:
13	chr9:97773273..97775913-chr9:97866060..97867838,2	MCF-7	breast:
14	chr9:97770812..97773643-chr9:97773924..97776829,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000207617	Chromatin interaction
ENSG00000148120	Chromatin interaction
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1004373	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10117370	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10119512	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10121760	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10123819	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1020963	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10512253	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761364	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761368	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761369	0.90[EUR][1000 genomes]
rs10993427	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993464	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993467	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1113102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1412488	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1564234	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1571894	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1571895	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2061800	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2404295	0.81[AMR][1000 genomes]
rs2404305	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2404456	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3802454	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3802456	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858089	0.82[AMR][1000 genomes]
rs4537362	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743979	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743980	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743981	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4743982	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743984	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744422	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744423	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744424	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744425	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744426	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744428	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4744430	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744431	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744432	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744433	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744435	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744436	0.92[AMR][1000 genomes]
rs6479588	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479591	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6479592	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7020709	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7021351	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7022452	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7043705	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7048786	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7048941	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7851173	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7854831	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7857679	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7862156	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7863291	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7865144	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871218	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7873479	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7873567	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs962229	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10761366	hCG_2003663	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97767800-97775200	Transcr. at gene 5' and 3'	A549	lung
2	chr9:97768000-97776400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97768000-97781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:97768000-97781000	Weak transcription	Gastric	stomach
5	chr9:97768000-97783800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:97768000-97786200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:97768200-97779400	Weak transcription	Fetal Brain Female	brain
8	chr9:97768200-97779800	Weak transcription	K562	blood
9	chr9:97768800-97781800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:97768800-97785600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:97769000-97779400	Weak transcription	GM12878-XiMat	blood
12	chr9:97769000-97783800	Weak transcription	Fetal Brain Male	brain
13	chr9:97769000-97787600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:97769600-97784200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:97769600-97790200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:97770000-97781200	Weak transcription	Small Intestine	intestine
17	chr9:97770600-97780800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:97770800-97777400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:97770800-97781600	Weak transcription	Colonic Mucosa	Colon
20	chr9:97770800-97782000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:97770800-97782200	Weak transcription	Lung	lung
22	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
23	chr9:97771000-97775800	Enhancers	Brain Hippocampus Middle	brain
24	chr9:97771000-97777000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:97771000-97778200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:97771000-97780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:97771000-97781600	Weak transcription	Primary B cells from cord blood	blood
28	chr9:97771200-97776000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr9:97771200-97777400	Genic enhancers	NHDF-Ad	bronchial
30	chr9:97771200-97777600	Weak transcription	Fetal Kidney	kidney
31	chr9:97771400-97775000	Genic enhancers	Osteobl	bone
32	chr9:97771800-97775000	Enhancers	Brain Cingulate Gyrus	brain
33	chr9:97772000-97777200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:97772000-97782200	Weak transcription	Esophagus	oesophagus
35	chr9:97772800-97775400	Strong transcription	Fetal Intestine Large	intestine
36	chr9:97772800-97775600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:97772800-97780800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:97772800-97780800	Weak transcription	Right Atrium	heart
39	chr9:97773000-97775200	Enhancers	Brain Substantia Nigra	brain
40	chr9:97773000-97776200	Weak transcription	Fetal Lung	lung
41	chr9:97773000-97776400	Weak transcription	Right Ventricle	heart
42	chr9:97773000-97782200	Weak transcription	Spleen	Spleen
43	chr9:97773200-97775000	Genic enhancers	Colon Smooth Muscle	Colon
44	chr9:97773200-97776000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:97773200-97776000	Weak transcription	Placenta	Placenta
46	chr9:97773200-97776400	Weak transcription	Stomach Mucosa	stomach
47	chr9:97773200-97778800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:97773200-97779400	Weak transcription	HMEC	breast
49	chr9:97773200-97793200	Weak transcription	Brain Germinal Matrix	brain
50	chr9:97773400-97776000	Weak transcription	NH-A	brain

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