Variant report

Variant	rs10761369
Chromosome Location	chr9:97793983-97793984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97785869..97788341-chr9:97791572..97794035,3	MCF-7	breast:
2	chr9:97793038..97795418-chr9:97797884..97800566,2	K562	blood:
3	chr9:97683038..97684583-chr9:97793134..97794968,2	MCF-7	breast:
4	chr9:97792342..97793987-chr9:97802659..97804912,2	K562	blood:
5	chr9:97792211..97795140-chr9:97806961..97811123,4	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIATL1-7	chr9:97792029-97794143	ENSG00000251631
2	lnc-FANCC-3	chr9:97792029-97794141	NONHSAT133343

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1004373	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs10119512	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs10121760	0.82[EUR][1000 genomes]
rs10123819	0.82[EUR][1000 genomes]
rs1020963	0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs10512253	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs10761364	0.91[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs10761366	0.90[EUR][1000 genomes]
rs10761368	0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs10993464	0.82[EUR][1000 genomes]
rs10993467	0.82[EUR][1000 genomes]
rs1113102	0.90[EUR][1000 genomes]
rs1412488	0.84[EUR][1000 genomes]
rs1564234	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs1571894	0.83[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1571895	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs2061800	0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2404302	0.83[CEU][hapmap]
rs2404305	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs2404456	0.83[CEU][hapmap];0.87[JPT][hapmap]
rs3802454	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs3802456	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4537362	0.83[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs4743979	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs4743980	0.82[EUR][1000 genomes]
rs4743981	0.82[EUR][1000 genomes]
rs4743982	0.82[EUR][1000 genomes]
rs4743984	0.91[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs4744422	0.81[EUR][1000 genomes]
rs4744423	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4744424	0.83[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs4744425	0.83[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs4744426	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs4744430	0.91[CEU][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs4744431	0.82[EUR][1000 genomes]
rs4744432	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs4744433	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs4744435	0.83[CEU][hapmap]
rs6479588	0.84[EUR][1000 genomes]
rs6479591	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs6479592	0.83[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs7020709	0.83[CEU][hapmap];0.87[JPT][hapmap]
rs7021351	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs7022452	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs7043705	0.91[EUR][1000 genomes]
rs7048786	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7048941	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7851173	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs7857679	0.84[EUR][1000 genomes]
rs7862156	0.91[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7863291	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7865144	0.88[EUR][1000 genomes]
rs7871218	0.82[EUR][1000 genomes]
rs7873479	0.81[EUR][1000 genomes]
rs7873567	0.82[EUR][1000 genomes]
rs962229	0.87[JPT][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
2	chr9:97777400-97794200	Weak transcription	Thymus	Thymus
3	chr9:97783600-97794000	Weak transcription	GM12878-XiMat	blood
4	chr9:97787000-97794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:97787800-97795800	Genic enhancers	Osteobl	bone
6	chr9:97788000-97794800	Genic enhancers	Muscle Satellite Cultured Cells	--
7	chr9:97788200-97794400	Weak transcription	K562	blood
8	chr9:97788400-97795800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:97788800-97795000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:97788800-97795800	Enhancers	Psoas Muscle	Psoas
11	chr9:97789000-97794200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:97789000-97794400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:97789000-97806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:97790000-97794400	Genic enhancers	NH-A	brain
15	chr9:97790000-97795800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:97790000-97796800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:97790200-97794600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:97790200-97794600	Genic enhancers	Left Ventricle	heart
19	chr9:97790200-97795600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:97790200-97795800	Enhancers	Right Atrium	heart
21	chr9:97790200-97796000	Enhancers	Brain Angular Gyrus	brain
22	chr9:97790200-97796400	Genic enhancers	HSMM	muscle
23	chr9:97790600-97794000	Enhancers	Brain Hippocampus Middle	brain
24	chr9:97790600-97794800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:97790600-97795800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:97790800-97795600	Genic enhancers	Fetal Intestine Small	intestine
27	chr9:97791000-97794000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:97791000-97794000	Weak transcription	HMEC	breast
29	chr9:97791200-97795600	Genic enhancers	Liver	Liver
30	chr9:97791200-97795800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:97791400-97795800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:97791600-97799600	Weak transcription	Hela-S3	cervix
33	chr9:97791600-97800000	Weak transcription	Placenta	Placenta
34	chr9:97791800-97794000	Enhancers	Colon Smooth Muscle	Colon
35	chr9:97791800-97794000	Weak transcription	Gastric	stomach
36	chr9:97791800-97795400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr9:97792000-97794000	Enhancers	NHLF	lung
38	chr9:97792000-97794400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:97792200-97794400	Weak transcription	Ovary	ovary
40	chr9:97792600-97794000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:97792600-97794200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:97792600-97794200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr9:97792600-97795800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr9:97792800-97794000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:97792800-97794000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:97792800-97794000	Transcr. at gene 5' and 3'	A549	lung
47	chr9:97792800-97794200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr9:97792800-97794600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:97792800-97795000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr9:97792800-97795600	Genic enhancers	Fetal Stomach	stomach

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