Variant report

Variant	rs1076265
Chromosome Location	chr14:71138716-71138717
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71136925..71138965-chr14:71144431..71146081,2	MCF-7	breast:
2	chr14:71132610..71134964-chr14:71136906..71139013,2	MCF-7	breast:
3	chr14:71136522..71138856-chr14:71141458..71144238,3	MCF-7	breast:
4	chr14:71107436..71111203-chr14:71136387..71139039,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133985	Chromatin interaction
ENSG00000245466	Chromatin interaction
ENSG00000259115	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4899365	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1831100	chr14:71132235-71139550	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1076265	RGS6	cis	cerebellum	SCAN
rs1076265	ZFYVE26	cis	parietal	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71112800-71140000	Weak transcription	Fetal Brain Male	brain
2	chr14:71128400-71140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:71131200-71139600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:71133200-71139000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:71133200-71140400	Weak transcription	Fetal Intestine Small	intestine
6	chr14:71133200-71140600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:71133200-71140600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:71133200-71140600	Weak transcription	Fetal Thymus	thymus
9	chr14:71133200-71144200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:71133200-71150600	Weak transcription	Pancreas	Pancrea
11	chr14:71133200-71151000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:71133400-71141600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:71133600-71140600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:71133600-71143000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr14:71133600-71143800	Weak transcription	Small Intestine	intestine
17	chr14:71133800-71139000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:71133800-71141000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:71134000-71143400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:71134200-71140200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:71134200-71140200	Strong transcription	Fetal Brain Female	brain
22	chr14:71134200-71142800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:71134400-71139800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:71134400-71141000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:71134400-71141000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:71134400-71141400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:71134800-71140400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr14:71135000-71141000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr14:71135200-71144400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr14:71135800-71140800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:71136000-71139000	Strong transcription	Thymus	Thymus
33	chr14:71136000-71141000	Strong transcription	Primary T cells from cord blood	blood
34	chr14:71136200-71143000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:71136400-71139800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:71136400-71140200	Strong transcription	Brain Germinal Matrix	brain
37	chr14:71136600-71138800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr14:71136600-71139400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:71136600-71140000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:71136800-71139000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:71136800-71139600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr14:71137000-71139000	Strong transcription	Fetal Stomach	stomach
43	chr14:71137000-71139400	Weak transcription	Brain Angular Gyrus	brain
44	chr14:71137000-71141000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:71137000-71141400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr14:71137200-71138800	Strong transcription	Gastric	stomach
47	chr14:71137200-71139000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:71137200-71139200	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr14:71137200-71139400	Strong transcription	Primary B cells from cord blood	blood
50	chr14:71137200-71140800	Strong transcription	GM12878-XiMat	blood

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