Variant report
| Variant | rs10763068 |
|---|---|
| Chromosome Location | chr10:55872391-55872392 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 10:55597627-55602376..10:55871238-55872736 | GM12878 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10509005 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs10763067 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs10825233 | 0.95[CEU][hapmap];1.00[CHB][hapmap] |
| rs10825234 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap] |
| rs10825235 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs10825236 | 0.84[CEU][hapmap];1.00[CHB][hapmap] |
| rs10825237 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap] |
| rs10825242 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10825243 | 1.00[JPT][hapmap] |
| rs11004075 | 1.00[JPT][hapmap] |
| rs11004076 | 0.81[CHD][hapmap];1.00[JPT][hapmap] |
| rs12360522 | 1.00[JPT][hapmap] |
| rs12413011 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap] |
| rs12782364 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16905760 | 1.00[JPT][hapmap] |
| rs4007262 | 0.86[ASN][1000 genomes] |
| rs4007264 | 0.81[CHD][hapmap];1.00[JPT][hapmap] |
| rs4319419 | 1.00[JPT][hapmap] |
| rs4397745 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4625368 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4935500 | 0.81[CHD][hapmap];1.00[JPT][hapmap] |
| rs7904409 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv948730 | chr10:55845301-56093271 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1035173 | chr10:55847066-56005288 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
