Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10490981	0.80[YRI][hapmap]
rs10763068	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10763074	0.88[YRI][hapmap]
rs10763075	0.87[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap]
rs10763076	0.90[YRI][hapmap]
rs10825234	0.81[CHD][hapmap]
rs10825237	0.81[CHD][hapmap]
rs10825242	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10825243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10825244	0.90[YRI][hapmap]
rs11004075	1.00[JPT][hapmap]
rs11004076	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap]
rs12360522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12413011	0.81[CHD][hapmap]
rs12764713	0.89[YRI][hapmap]
rs12782364	1.00[JPT][hapmap]
rs16905760	1.00[JPT][hapmap]
rs4007262	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4319419	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4495798	0.88[MKK][hapmap];0.89[YRI][hapmap]
rs4625368	0.87[ASN][1000 genomes]
rs4935500	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs4998401	0.88[YRI][hapmap]
rs73239954	0.89[ASN][1000 genomes]
rs7904409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7920089	0.83[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap]
rs9663427	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4007264	TIMM23	cis	cerebellum	SCAN
rs4007264	ASPA	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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