Variant report

Variant	rs10490981
Chromosome Location	chr10:55938133-55938134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082369	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10490980	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10763074	0.86[YRI][hapmap]
rs10763075	1.00[ASW][hapmap];0.89[YRI][hapmap]
rs10763076	0.89[YRI][hapmap]
rs10763079	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10825243	0.80[YRI][hapmap]
rs10825244	0.89[YRI][hapmap]
rs10825259	0.80[EUR][1000 genomes]
rs11004076	0.87[ASW][hapmap]
rs11004121	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs11004130	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs11004137	1.00[ASN][1000 genomes]
rs12246601	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12253982	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs12360522	0.80[YRI][hapmap]
rs12764713	0.88[YRI][hapmap]
rs12774588	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1975407	0.84[TSI][hapmap]
rs2016919	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap]
rs4007264	0.80[YRI][hapmap]
rs4495798	1.00[ASW][hapmap];0.88[YRI][hapmap]
rs4504975	1.00[JPT][hapmap]
rs4935500	0.87[ASW][hapmap];0.80[YRI][hapmap]
rs4998401	0.87[YRI][hapmap]
rs6481064	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7904199	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs7904409	1.00[ASW][hapmap];0.80[YRI][hapmap]
rs7907790	0.88[YRI][hapmap]
rs7915833	1.00[CHB][hapmap]
rs7920089	1.00[ASW][hapmap];0.89[YRI][hapmap]
rs9663427	1.00[YRI][hapmap]
rs972482	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895431	chr10:55898144-55955444	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv895432	chr10:55922706-55959660	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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