Variant report

Variant	rs10763535
Chromosome Location	chr10:52311090-52311091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52308145..52313390-chr10:52380498..52385309,7	K562	blood:
2	chr10:52303071..52304706-chr10:52310411..52312427,2	K562	blood:
3	chr10:52310207..52315512-chr10:52382852..52386021,4	K562	blood:
4	chr10:52310270..52314455-chr10:52315610..52319835,4	MCF-7	breast:
5	chr10:52308481..52311283-chr10:52312051..52314747,2	MCF-7	breast:
6	chr10:52310656..52316983-chr10:52334408..52339466,9	K562	blood:
7	chr10:52309255..52311683-chr10:52321787..52323365,2	K562	blood:

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1010930	1.00[ASN][1000 genomes]
rs10508927	0.82[CEU][hapmap]
rs10763382	0.82[CEU][hapmap]
rs10763550	0.94[CHB][hapmap];0.93[ASN][1000 genomes]
rs10763560	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs10763566	0.94[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10825882	0.82[CEU][hapmap]
rs10825904	0.83[CEU][hapmap]
rs10825978	0.82[CEU][hapmap]
rs10826149	0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs10826155	0.98[ASN][1000 genomes]
rs10826159	0.99[ASN][1000 genomes]
rs10826160	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs10826161	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826163	1.00[ASN][1000 genomes]
rs10826164	1.00[ASN][1000 genomes]
rs10826165	1.00[ASN][1000 genomes]
rs10826166	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826167	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs10826169	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10826170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826228	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11005356	0.83[CEU][hapmap]
rs11005579	0.92[CEU][hapmap]
rs11005614	0.82[CEU][hapmap]
rs11006054	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11006075	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11006084	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006114	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006118	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006141	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs11006160	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11006201	0.87[ASN][1000 genomes]
rs11006217	0.89[CHB][hapmap];0.90[ASN][1000 genomes]
rs12219692	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12415817	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572387	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs1884570	1.00[ASN][1000 genomes]
rs1884572	0.83[CEU][hapmap]
rs1916572	0.83[CEU][hapmap]
rs2024872	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2144861	0.94[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2224249	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs3011777	0.89[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs34659292	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739989	0.82[CEU][hapmap]
rs4935173	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935174	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935733	0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs7074764	0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7078284	0.95[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs7086029	0.82[CEU][hapmap]
rs7088141	0.95[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7094143	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893884	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs7900424	0.89[CHB][hapmap];0.90[ASN][1000 genomes]
rs7902354	0.81[ASN][1000 genomes]
rs7907260	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915606	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs7916397	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs7920818	0.82[CEU][hapmap]
rs927048	0.83[CEU][hapmap]
rs9299582	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs9919413	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:52299600-52320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:52300800-52322800	Weak transcription	Primary B cells from cord blood	blood
4	chr10:52301600-52327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:52303200-52312200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:52303400-52312200	Weak transcription	Adipose Nuclei	Adipose
7	chr10:52303400-52314000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:52304000-52312000	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:52304400-52312000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:52305400-52329600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:52306000-52312600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:52306000-52312800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:52306000-52312800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:52306000-52314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:52306000-52316000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:52306000-52319000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:52306000-52321400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:52306000-52322000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:52306000-52331800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:52308000-52337200	Weak transcription	Primary T cells from cord blood	blood
21	chr10:52308800-52312000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:52309200-52312600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:52309400-52311200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr10:52309600-52311400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:52309600-52311400	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:52309600-52312000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:52309600-52312200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:52309600-52312200	Enhancers	Brain Hippocampus Middle	brain
29	chr10:52309600-52316400	Enhancers	Brain Substantia Nigra	brain
30	chr10:52309800-52311200	Enhancers	Small Intestine	intestine
31	chr10:52309800-52311800	Weak transcription	NHDF-Ad	bronchial
32	chr10:52309800-52312600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:52310000-52311200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:52310000-52312800	Enhancers	Psoas Muscle	Psoas
35	chr10:52310200-52311200	Enhancers	Stomach Mucosa	stomach
36	chr10:52310200-52311400	Enhancers	H1 Cell Line	embryonic stem cell
37	chr10:52310200-52311400	Enhancers	Fetal Heart	heart
38	chr10:52310400-52311400	Weak transcription	NHLF	lung
39	chr10:52310400-52311600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:52310400-52311800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:52310400-52312000	Weak transcription	Brain Angular Gyrus	brain
42	chr10:52310400-52312000	Weak transcription	Brain Anterior Caudate	brain
43	chr10:52310400-52312200	Weak transcription	Fetal Stomach	stomach
44	chr10:52310400-52314200	Weak transcription	Colonic Mucosa	Colon
45	chr10:52310400-52314800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:52310400-52316000	Weak transcription	Lung	lung
47	chr10:52310400-52323800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:52310600-52311600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:52310600-52311800	Weak transcription	Ovary	ovary
50	chr10:52310600-52312000	Weak transcription	Brain Cingulate Gyrus	brain

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