Variant report

Variant	rs10826161
Chromosome Location	chr10:52296835-52296836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1010930	1.00[ASN][1000 genomes]
rs10763535	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763550	0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.93[ASN][1000 genomes]
rs10763560	0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs10763566	0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10826149	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10826155	0.98[ASN][1000 genomes]
rs10826159	0.99[ASN][1000 genomes]
rs10826160	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10826163	1.00[ASN][1000 genomes]
rs10826164	1.00[ASN][1000 genomes]
rs10826165	1.00[ASN][1000 genomes]
rs10826166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826167	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10826169	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10826170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826228	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11005579	0.92[CEU][hapmap]
rs11006054	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11006075	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11006084	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006114	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006118	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006141	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[ASN][1000 genomes]
rs11006160	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11006201	0.87[ASN][1000 genomes]
rs11006217	0.90[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[ASN][1000 genomes]
rs12219692	0.94[CEU][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs12415817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572387	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1884570	1.00[ASN][1000 genomes]
rs1884572	0.80[EUR][1000 genomes]
rs2024872	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2144861	0.86[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2224249	0.90[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3011777	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs34659292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935728	0.81[EUR][1000 genomes]
rs4935733	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7074764	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7078284	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7088141	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7094143	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893884	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7900424	0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7902354	0.81[ASN][1000 genomes]
rs7907260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915606	0.90[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs7916397	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[ASN][1000 genomes]
rs7920818	0.81[MEX][hapmap];0.86[TSI][hapmap]
rs7922802	0.86[TSI][hapmap]
rs927048	0.80[EUR][1000 genomes]
rs9299582	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[ASN][1000 genomes]
rs9919413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52271600-52300600	Weak transcription	Aorta	Aorta
2	chr10:52272600-52302800	Weak transcription	Fetal Stomach	stomach
3	chr10:52273600-52298400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:52273600-52299800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:52279400-52298200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:52279600-52298400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:52279600-52298400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:52279600-52298800	Weak transcription	Lung	lung
9	chr10:52279800-52298600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:52282800-52301200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:52283000-52300400	Weak transcription	Psoas Muscle	Psoas
13	chr10:52284600-52297600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:52286400-52304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:52287400-52298200	Weak transcription	Left Ventricle	heart
16	chr10:52287800-52302800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:52288200-52298600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:52288600-52300000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:52289400-52300000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:52291600-52298600	Weak transcription	Pancreas	Pancrea
21	chr10:52291800-52298600	Weak transcription	Gastric	stomach
22	chr10:52293600-52298600	Enhancers	K562	blood
23	chr10:52294600-52297000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:52294600-52298600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:52295200-52298600	Weak transcription	NHEK	skin
26	chr10:52295600-52298400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:52295800-52298200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:52295800-52298600	Enhancers	Brain Hippocampus Middle	brain
29	chr10:52296000-52297600	Enhancers	Brain Cingulate Gyrus	brain
30	chr10:52296000-52298400	Weak transcription	Right Atrium	heart
31	chr10:52296200-52297200	Enhancers	Brain Angular Gyrus	brain
32	chr10:52296400-52297000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:52296400-52297000	Enhancers	HUVEC	blood vessel
34	chr10:52296400-52297000	Enhancers	NH-A	brain
35	chr10:52296400-52297200	Enhancers	Osteobl	bone
36	chr10:52296600-52297000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:52296600-52297000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:52296600-52297000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:52296600-52297200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:52296600-52297200	Enhancers	NHDF-Ad	bronchial
41	chr10:52296600-52298600	Enhancers	Brain Substantia Nigra	brain
42	chr10:52296600-52298800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr10:52296600-52300600	Enhancers	Brain Anterior Caudate	brain
44	chr10:52296800-52297000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:52296800-52297000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:52296800-52297000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:52296800-52297000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr10:52296800-52297000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:52296800-52297200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:52296800-52297400	Weak transcription	Placenta	Placenta

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