Variant report
| Variant | rs10764571 |
|---|---|
| Chromosome Location | chr10:25927191-25927192 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231422 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11014654 | 0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1335201 | 0.95[ASN][1000 genomes] |
| rs1335202 | 0.84[ASN][1000 genomes] |
| rs1335203 | 0.90[ASN][1000 genomes] |
| rs16926215 | 0.86[ASN][1000 genomes] |
| rs1981119 | 0.98[ASN][1000 genomes] |
| rs1981120 | 0.86[ASN][1000 genomes] |
| rs2290167 | 0.86[MKK][hapmap];0.85[YRI][hapmap] |
| rs4749056 | 0.96[ASN][1000 genomes] |
| rs7093919 | 0.84[AFR][1000 genomes] |
| rs722968 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7901118 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7914182 | 0.89[EUR][1000 genomes] |
| rs989622 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044482 | chr10:25889919-25977270 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10764571 | BAMBI | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
