Variant report
| Variant | rs989622 |
|---|---|
| Chromosome Location | chr10:25941959-25941960 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR158-2 | chr10:25941797-25941971 | NONHSAT011809 |
| 2 | lnc-GPR158-2 | chr10:25941798-25941971 | XLOC_008416 |
| 3 | lnc-GPR158-2 | chr10:25941798-25941971 | NR_108069 |
| 4 | lnc-GPR158-2 | chr10:25941798-25941971 | NR_108067 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10764571 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11014654 | 0.91[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1335201 | 0.94[ASN][1000 genomes] |
| rs1335202 | 0.83[ASN][1000 genomes] |
| rs1335203 | 0.90[ASN][1000 genomes] |
| rs16926215 | 0.85[ASN][1000 genomes] |
| rs1981119 | 0.97[ASN][1000 genomes] |
| rs1981120 | 0.85[ASN][1000 genomes] |
| rs2290167 | 0.82[MKK][hapmap] |
| rs2367978 | 0.83[AFR][1000 genomes] |
| rs4749056 | 0.95[ASN][1000 genomes] |
| rs4749063 | 0.81[AFR][1000 genomes] |
| rs722968 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7901118 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7908814 | 0.81[AFR][1000 genomes] |
| rs7914182 | 0.93[EUR][1000 genomes] |
| rs7916640 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044482 | chr10:25889919-25977270 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs989622 | BAMBI | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
