Variant report

Variant	rs10764666
Chromosome Location	chr10:18956643-18956644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18956344..18959967-chr10:18962484..18965500,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10764640	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10764666	ARL5B	Cis_1M	lymphoblastoid	RTeQTL
rs10764666	RP11-499P20.2	cis	Whole Blood	GTEx
rs10764666	CACNB2	Cis_1M	lymphoblastoid	RTeQTL
rs10764666	RP11-499P20.2	cis	Nerve Tibial	GTEx
rs10764666	RP11-499P20.2	cis	Thyroid	GTEx
rs10764666	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:18949600-18957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:18949600-18972000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18950000-18957600	Weak transcription	Fetal Stomach	stomach
5	chr10:18950200-18956800	Weak transcription	Left Ventricle	heart
6	chr10:18950200-18957000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:18950200-18957000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:18950200-18957600	Weak transcription	Placenta	Placenta
9	chr10:18950400-18957000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:18950800-18962400	Weak transcription	Fetal Kidney	kidney
11	chr10:18951000-18957000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:18951000-18957400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:18951000-18961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:18951000-18962400	Weak transcription	Fetal Lung	lung
15	chr10:18951000-18965800	Weak transcription	Colonic Mucosa	Colon
16	chr10:18951000-18966600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:18951000-18967400	Weak transcription	Esophagus	oesophagus
18	chr10:18951000-18971800	Weak transcription	Spleen	Spleen
19	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:18951200-18956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:18951200-18957200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:18951200-18957600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:18951200-18964400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:18951400-18957600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:18951400-18957800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:18951400-18962400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:18951400-18962800	Weak transcription	Fetal Brain Male	brain
28	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
29	chr10:18952200-18956800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:18952400-18957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:18953600-18957600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:18953600-18957600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:18953800-18956800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:18954000-18959400	Weak transcription	Ovary	ovary
35	chr10:18954000-18960200	Weak transcription	Lung	lung
36	chr10:18954000-18966600	Strong transcription	Dnd41	blood
37	chr10:18954200-18957000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:18954200-18957000	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:18954400-18956800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:18954400-18957000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:18954400-18957600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:18954400-18962200	Weak transcription	Psoas Muscle	Psoas
43	chr10:18954400-18964400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:18954400-18967200	Weak transcription	Gastric	stomach
45	chr10:18954400-18969200	Weak transcription	Right Ventricle	heart
46	chr10:18954400-18973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:18954600-18959400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:18954800-18956800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:18954800-18957400	Enhancers	Fetal Heart	heart
50	chr10:18954800-18959800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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