Variant report

Variant	rs10766241
Chromosome Location	chr11:15389925-15389926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10732461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023539	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419550	0.85[ASN][1000 genomes]
rs4356209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381353	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506629	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6486240	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7479972	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927667	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1044103	chr11:15345545-15390081	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15388000-15390000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:15388800-15390000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:15388800-15390200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:15388800-15390400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:15389000-15390000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:15389000-15390000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:15389000-15390000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:15389000-15390200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:15389000-15390600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr11:15389600-15390000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:15389600-15390000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:15389600-15391200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:15389800-15390000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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